A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1894.8
nTPM
Monaco:
545.7
nTPM
Schmiedel:
266.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1894.8
HPA sample
nTPM
Memory B-cell nTPM: 1894.8
Samples: 6
Max nTPM: 2363.0
Min nTPM: 1469.4
P10809_1017
1469.4
P10809_1025
1980.3
P10809_1044
2363.0
P10809_1063
1672.5
P10809_1092
1948.5
P10809_1105
1935.3
Naive B-cell nTPM: 1758.3
Samples: 6
Max nTPM: 2511.8
Min nTPM: 1321.3
P10809_1011
1321.3
P10809_1029
1639.0
P10809_1048
2511.8
P10809_1067
1578.0
P10809_1091
1589.8
P10809_1104
1909.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
545.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 545.8
Samples: 4
Max nTPM: 851.6
Min nTPM: 216.9
RHH5310_R3677
581.7
RHH5218_R3590
216.9
RHH5247_R3619
851.6
RHH5276_R3648
532.9
Naive B-cell nTPM: 535.5
Samples: 4
Max nTPM: 759.2
Min nTPM: 298.7
RHH5308_R3675
759.2
RHH5216_R3588
298.7
RHH5245_R3617
669.0
RHH5274_R3646
415.0
Non-switched memory B-cell nTPM: 446.9
Samples: 4
Max nTPM: 661.4
Min nTPM: 290.4
RHH5309_R3676
661.4
RHH5217_R3589
290.4
RHH5246_R3618
324.9
RHH5275_R3647
510.9
Plasmablast nTPM: 484.1
Samples: 4
Max nTPM: 612.0
Min nTPM: 364.3
RHH5312_R3679
612.0
RHH5220_R3592
364.3
RHH5249_R3621
443.7
RHH5278_R3650
516.4
Switched memory B-cell nTPM: 438.6
Samples: 4
Max nTPM: 658.5
Min nTPM: 271.8
RHH5311_R3678
658.5
RHH5219_R3591
392.6
RHH5248_R3620
271.8
RHH5277_R3649
431.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
266.1
Schmiedel sample id
TPM
Naive B-cell TPM: 266.1
Samples: 91
Max TPM: 498.0
Min TPM: 40.2
B_CELL_NAIVE_1
498.0
B_CELL_NAIVE_2
449.2
B_CELL_NAIVE_3
445.4
B_CELL_NAIVE_4
433.0
B_CELL_NAIVE_5
429.1
B_CELL_NAIVE_6
429.0
B_CELL_NAIVE_7
428.6
B_CELL_NAIVE_8
428.1
B_CELL_NAIVE_9
419.2
B_CELL_NAIVE_10
418.5
B_CELL_NAIVE_11
414.1
B_CELL_NAIVE_12
409.9
B_CELL_NAIVE_13
403.9
B_CELL_NAIVE_14
398.3
B_CELL_NAIVE_15
394.5
B_CELL_NAIVE_16
379.2
B_CELL_NAIVE_17
368.4
B_CELL_NAIVE_18
361.3
B_CELL_NAIVE_19
361.1
B_CELL_NAIVE_20
355.6
B_CELL_NAIVE_21
344.2
B_CELL_NAIVE_22
343.1
B_CELL_NAIVE_23
336.0
B_CELL_NAIVE_24
330.0
B_CELL_NAIVE_25
329.2
B_CELL_NAIVE_26
327.6
B_CELL_NAIVE_27
325.9
B_CELL_NAIVE_28
325.8
B_CELL_NAIVE_29
325.0
B_CELL_NAIVE_30
324.9
B_CELL_NAIVE_31
324.2
B_CELL_NAIVE_32
318.7
B_CELL_NAIVE_33
314.4
B_CELL_NAIVE_34
313.8
B_CELL_NAIVE_35
313.3
B_CELL_NAIVE_36
312.5
B_CELL_NAIVE_37
306.9
B_CELL_NAIVE_38
306.2
B_CELL_NAIVE_39
304.3
B_CELL_NAIVE_40
303.9
B_CELL_NAIVE_41
298.3
B_CELL_NAIVE_42
294.8
B_CELL_NAIVE_43
280.3
B_CELL_NAIVE_44
280.1
B_CELL_NAIVE_45
271.9
B_CELL_NAIVE_46
268.9
B_CELL_NAIVE_47
261.7
B_CELL_NAIVE_48
259.4
B_CELL_NAIVE_49
257.6
B_CELL_NAIVE_50
257.3
B_CELL_NAIVE_51
252.7
B_CELL_NAIVE_52
251.2
B_CELL_NAIVE_53
250.9
B_CELL_NAIVE_54
249.6
B_CELL_NAIVE_55
248.8
B_CELL_NAIVE_56
242.9
B_CELL_NAIVE_57
236.2
B_CELL_NAIVE_58
234.5
B_CELL_NAIVE_59
233.4
B_CELL_NAIVE_60
224.3
B_CELL_NAIVE_61
222.6
B_CELL_NAIVE_62
217.6
B_CELL_NAIVE_63
215.3
B_CELL_NAIVE_64
204.1
B_CELL_NAIVE_65
203.4
B_CELL_NAIVE_66
200.9
B_CELL_NAIVE_67
200.1
B_CELL_NAIVE_68
182.3
B_CELL_NAIVE_69
182.2
B_CELL_NAIVE_70
179.6
B_CELL_NAIVE_71
176.6
B_CELL_NAIVE_72
176.2
B_CELL_NAIVE_73
173.9
B_CELL_NAIVE_74
162.4
B_CELL_NAIVE_75
162.2
B_CELL_NAIVE_76
159.7
B_CELL_NAIVE_77
154.1
B_CELL_NAIVE_78
144.6
B_CELL_NAIVE_79
125.7
B_CELL_NAIVE_80
116.4
B_CELL_NAIVE_81
114.0
B_CELL_NAIVE_82
104.5
B_CELL_NAIVE_83
104.1
B_CELL_NAIVE_84
95.9
B_CELL_NAIVE_85
84.2
B_CELL_NAIVE_86
81.6
B_CELL_NAIVE_87
67.3
B_CELL_NAIVE_88
57.2
B_CELL_NAIVE_89
52.3
B_CELL_NAIVE_90
40.8
B_CELL_NAIVE_91
40.2
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