A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1188.0
nTPM
Monaco:
368.1
nTPM
Schmiedel:
272.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1188.0
HPA sample
nTPM
Classical monocyte nTPM: 1188.0
Samples: 6
Max nTPM: 2188.8
Min nTPM: 824.0
P10809_1003
2188.8
P10809_1020
985.6
P10809_1039
1071.9
P10809_1058
824.0
P10809_1080
840.9
P10809_1107
1217.0
Intermediate monocyte nTPM: 885.1
Samples: 6
Max nTPM: 1288.9
Min nTPM: 623.8
P10809_1004
761.4
P10809_1023
1017.6
P10809_1042
944.5
P10809_1061
623.8
P10809_1081
674.2
P10809_1108
1288.9
Non-classical monocyte nTPM: 728.8
Samples: 5
Max nTPM: 1004.4
Min nTPM: 468.0
P10809_1005
795.3
P10809_1053
653.4
P10809_1072
723.0
P10809_1082
468.0
P10809_1109
1004.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
368.1
Monaco sample
nTPM
Classical monocyte nTPM: 287.8
Samples: 4
Max nTPM: 389.3
Min nTPM: 221.3
RHH5313_R3680
389.3
RHH5221_R3593
223.6
RHH5250_R3622
221.3
RHH5279_R3651
317.0
Intermediate monocyte nTPM: 368.0
Samples: 4
Max nTPM: 495.2
Min nTPM: 309.9
RHH5314_R3681
495.2
RHH5222_R3594
356.3
RHH5251_R3623
310.8
RHH5280_R3652
309.9
Non-classical monocyte nTPM: 226.2
Samples: 4
Max nTPM: 337.2
Min nTPM: 151.1
RHH5315_R3682
337.2
RHH5223_R3595
195.5
RHH5252_R3624
220.9
RHH5281_R3653
151.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
272.6
Schmiedel sample id
TPM
Classical monocyte TPM: 272.6
Samples: 91
Max TPM: 447.7
Min TPM: 116.0
MONOCYTES_1
447.7
MONOCYTES_2
446.7
MONOCYTES_3
427.0
MONOCYTES_4
425.1
MONOCYTES_5
416.6
MONOCYTES_6
412.0
MONOCYTES_7
393.4
MONOCYTES_8
387.4
MONOCYTES_9
376.0
MONOCYTES_10
375.5
MONOCYTES_11
374.4
MONOCYTES_12
372.6
MONOCYTES_13
371.7
MONOCYTES_14
367.2
MONOCYTES_15
362.3
MONOCYTES_16
360.8
MONOCYTES_17
359.0
MONOCYTES_18
356.8
MONOCYTES_19
351.7
MONOCYTES_20
349.7
MONOCYTES_21
349.4
MONOCYTES_22
347.0
MONOCYTES_23
344.6
MONOCYTES_24
343.6
MONOCYTES_25
343.0
MONOCYTES_26
339.4
MONOCYTES_27
336.5
MONOCYTES_28
328.2
MONOCYTES_29
327.0
MONOCYTES_30
323.8
MONOCYTES_31
311.0
MONOCYTES_32
300.7
MONOCYTES_33
300.5
MONOCYTES_34
295.0
MONOCYTES_35
292.8
MONOCYTES_36
288.8
MONOCYTES_37
288.8
MONOCYTES_38
287.9
MONOCYTES_39
286.3
MONOCYTES_40
284.9
MONOCYTES_41
281.7
MONOCYTES_42
281.3
MONOCYTES_43
279.1
MONOCYTES_44
271.9
MONOCYTES_45
269.7
MONOCYTES_46
266.2
MONOCYTES_47
257.7
MONOCYTES_48
255.3
MONOCYTES_49
253.8
MONOCYTES_50
249.2
MONOCYTES_51
248.3
MONOCYTES_52
246.1
MONOCYTES_53
244.4
MONOCYTES_54
241.4
MONOCYTES_55
240.3
MONOCYTES_56
238.4
MONOCYTES_57
237.5
MONOCYTES_58
236.3
MONOCYTES_59
233.5
MONOCYTES_60
231.6
MONOCYTES_61
229.5
MONOCYTES_62
225.4
MONOCYTES_63
223.5
MONOCYTES_64
216.4
MONOCYTES_65
216.1
MONOCYTES_66
213.9
MONOCYTES_67
213.4
MONOCYTES_68
212.9
MONOCYTES_69
212.8
MONOCYTES_70
210.0
MONOCYTES_71
209.0
MONOCYTES_72
204.6
MONOCYTES_73
202.7
MONOCYTES_74
199.7
MONOCYTES_75
198.8
MONOCYTES_76
194.4
MONOCYTES_77
191.3
MONOCYTES_78
187.1
MONOCYTES_79
187.0
MONOCYTES_80
182.4
MONOCYTES_81
163.3
MONOCYTES_82
161.6
MONOCYTES_83
152.7
MONOCYTES_84
148.8
MONOCYTES_85
146.0
MONOCYTES_86
145.1
MONOCYTES_87
133.1
MONOCYTES_88
131.4
MONOCYTES_89
130.1
MONOCYTES_90
129.3
MONOCYTES_91
116.0
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Non-classical monocyte TPM: 149.8
Samples: 90
Max TPM: 325.0
Min TPM: 34.8
M2_1
325.0
M2_2
262.2
M2_3
260.9
M2_4
260.5
M2_5
252.5
M2_6
245.7
M2_7
244.0
M2_8
237.6
M2_9
235.8
M2_10
230.0
M2_11
218.4
M2_12
217.8
M2_13
211.4
M2_14
208.7
M2_15
207.4
M2_16
207.3
M2_17
202.8
M2_18
202.7
M2_19
199.1
M2_20
197.3
M2_21
197.3
M2_22
196.7
M2_23
196.6
M2_24
194.9
M2_25
191.4
M2_26
185.2
M2_27
181.6
M2_28
177.7
M2_29
175.2
M2_30
174.8
M2_31
173.1
M2_32
171.9
M2_33
171.3
M2_34
170.8
M2_35
167.1
M2_36
167.0
M2_37
165.8
M2_38
163.5
M2_39
161.2
M2_40
160.9
M2_41
159.7
M2_42
158.7
M2_43
157.6
M2_44
153.9
M2_45
153.2
M2_46
151.3
M2_47
149.9
M2_48
147.9
M2_49
146.3
M2_50
146.2
M2_51
145.9
M2_52
142.9
M2_53
138.8
M2_54
137.8
M2_55
136.7
M2_56
133.9
M2_57
133.5
M2_58
133.4
M2_59
128.3
M2_60
126.7
M2_61
121.1
M2_62
119.3
M2_63
119.3
M2_64
114.6
M2_65
113.9
M2_66
99.7
M2_67
99.6
M2_68
98.1
M2_69
96.6
M2_70
92.9
M2_71
92.7
M2_72
91.8
M2_73
91.1
M2_74
90.6
M2_75
84.7
M2_76
84.4
M2_77
81.6
M2_78
79.8
M2_79
79.0
M2_80
75.5
M2_81
66.8
M2_82
56.9
M2_83
56.7
M2_84
56.6
M2_85
54.5
M2_86
50.4
M2_87
48.4
M2_88
40.1
M2_89
38.8
M2_90
34.8
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