A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1118.6
nTPM
Monaco:
211.9
nTPM
Schmiedel:
222.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1118.6
HPA sample
nTPM
NK-cell nTPM: 1118.6
Samples: 6
Max nTPM: 1552.2
Min nTPM: 642.0
P10809_1013
850.6
P10809_1033
1269.5
P10809_1052
1177.2
P10809_1071
1220.1
P10809_1093
642.0
P10809_1103
1552.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
211.9
Monaco sample
nTPM
NK-cell nTPM: 211.9
Samples: 4
Max nTPM: 271.1
Min nTPM: 180.3
RHH5316_R3683
271.1
RHH5224_R3596
199.7
RHH5253_R3625
180.3
RHH5282_R3654
196.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
222.4
Schmiedel sample id
TPM
NK-cell TPM: 222.4
Samples: 90
Max TPM: 491.2
Min TPM: 59.9
NK_1
491.2
NK_2
399.5
NK_3
392.8
NK_4
382.4
NK_5
365.6
NK_6
359.6
NK_7
357.8
NK_8
356.2
NK_9
353.4
NK_10
340.3
NK_11
329.4
NK_12
328.5
NK_13
318.3
NK_14
316.9
NK_15
314.5
NK_16
313.3
NK_17
306.7
NK_18
304.2
NK_19
303.1
NK_20
299.6
NK_21
293.3
NK_22
288.6
NK_23
281.6
NK_24
280.2
NK_25
276.4
NK_26
271.4
NK_27
271.1
NK_28
267.4
NK_29
267.3
NK_30
266.0
NK_31
263.1
NK_32
256.9
NK_33
256.6
NK_34
255.3
NK_35
255.1
NK_36
252.1
NK_37
244.8
NK_38
241.4
NK_39
238.3
NK_40
237.1
NK_41
234.6
NK_42
231.8
NK_43
228.6
NK_44
219.8
NK_45
218.4
NK_46
217.8
NK_47
207.3
NK_48
206.9
NK_49
204.4
NK_50
203.5
NK_51
202.9
NK_52
197.0
NK_53
195.9
NK_54
193.5
NK_55
192.1
NK_56
190.0
NK_57
184.6
NK_58
181.1
NK_59
173.6
NK_60
172.6
NK_61
170.7
NK_62
166.5
NK_63
166.0
NK_64
164.0
NK_65
163.6
NK_66
161.0
NK_67
155.6
NK_68
153.5
NK_69
148.4
NK_70
146.0
NK_71
146.0
NK_72
145.5
NK_73
138.8
NK_74
136.0
NK_75
135.8
NK_76
132.0
NK_77
130.7
NK_78
118.5
NK_79
117.6
NK_80
116.9
NK_81
108.3
NK_82
102.2
NK_83
95.8
NK_84
91.1
NK_85
89.9
NK_86
84.7
NK_87
82.6
NK_88
74.4
NK_89
62.6
NK_90
59.9
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