A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
47.3
nTPM
Monaco:
35.4
nTPM
Schmiedel:
103.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.3
HPA sample
nTPM
Memory B-cell nTPM: 47.3
Samples: 6
Max nTPM: 64.1
Min nTPM: 18.3
P10809_1017
53.2
P10809_1025
43.8
P10809_1044
18.3
P10809_1063
64.1
P10809_1092
45.1
P10809_1105
59.3
Naive B-cell nTPM: 34.9
Samples: 6
Max nTPM: 46.8
Min nTPM: 27.2
P10809_1011
31.3
P10809_1029
31.8
P10809_1048
27.2
P10809_1067
44.0
P10809_1091
28.5
P10809_1104
46.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 16.4
Samples: 4
Max nTPM: 30.8
Min nTPM: 3.1
RHH5310_R3677
10.8
RHH5218_R3590
3.1
RHH5247_R3619
20.8
RHH5276_R3648
30.8
Naive B-cell nTPM: 18.5
Samples: 4
Max nTPM: 37.4
Min nTPM: 6.7
RHH5308_R3675
37.4
RHH5216_R3588
6.7
RHH5245_R3617
23.0
RHH5274_R3646
6.8
Non-switched memory B-cell nTPM: 16.4
Samples: 4
Max nTPM: 30.9
Min nTPM: 1.9
RHH5309_R3676
30.9
RHH5217_R3589
1.9
RHH5246_R3618
9.2
RHH5275_R3647
23.7
Plasmablast nTPM: 35.4
Samples: 4
Max nTPM: 52.5
Min nTPM: 24.6
RHH5312_R3679
52.5
RHH5220_R3592
24.6
RHH5249_R3621
33.9
RHH5278_R3650
30.4
Switched memory B-cell nTPM: 8.4
Samples: 4
Max nTPM: 12.7
Min nTPM: 3.4
RHH5311_R3678
8.3
RHH5219_R3591
12.7
RHH5248_R3620
9.2
RHH5277_R3649
3.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.1
Schmiedel sample id
TPM
Naive B-cell TPM: 103.1
Samples: 91
Max TPM: 168.0
Min TPM: 50.5
B_CELL_NAIVE_1
168.0
B_CELL_NAIVE_2
161.8
B_CELL_NAIVE_3
159.8
B_CELL_NAIVE_4
157.7
B_CELL_NAIVE_5
154.9
B_CELL_NAIVE_6
147.3
B_CELL_NAIVE_7
145.1
B_CELL_NAIVE_8
143.7
B_CELL_NAIVE_9
139.1
B_CELL_NAIVE_10
138.4
B_CELL_NAIVE_11
134.7
B_CELL_NAIVE_12
129.9
B_CELL_NAIVE_13
125.8
B_CELL_NAIVE_14
121.2
B_CELL_NAIVE_15
120.1
B_CELL_NAIVE_16
119.4
B_CELL_NAIVE_17
118.5
B_CELL_NAIVE_18
118.3
B_CELL_NAIVE_19
117.6
B_CELL_NAIVE_20
115.9
B_CELL_NAIVE_21
115.6
B_CELL_NAIVE_22
115.3
B_CELL_NAIVE_23
114.4
B_CELL_NAIVE_24
112.6
B_CELL_NAIVE_25
112.4
B_CELL_NAIVE_26
112.0
B_CELL_NAIVE_27
109.5
B_CELL_NAIVE_28
109.5
B_CELL_NAIVE_29
109.5
B_CELL_NAIVE_30
109.0
B_CELL_NAIVE_31
108.6
B_CELL_NAIVE_32
107.9
B_CELL_NAIVE_33
106.0
B_CELL_NAIVE_34
105.9
B_CELL_NAIVE_35
105.6
B_CELL_NAIVE_36
105.5
B_CELL_NAIVE_37
103.8
B_CELL_NAIVE_38
103.5
B_CELL_NAIVE_39
101.6
B_CELL_NAIVE_40
101.1
B_CELL_NAIVE_41
100.7
B_CELL_NAIVE_42
100.5
B_CELL_NAIVE_43
100.4
B_CELL_NAIVE_44
100.0
B_CELL_NAIVE_45
99.0
B_CELL_NAIVE_46
98.9
B_CELL_NAIVE_47
98.9
B_CELL_NAIVE_48
98.7
B_CELL_NAIVE_49
98.6
B_CELL_NAIVE_50
98.4
B_CELL_NAIVE_51
98.2
B_CELL_NAIVE_52
97.2
B_CELL_NAIVE_53
97.0
B_CELL_NAIVE_54
96.8
B_CELL_NAIVE_55
95.8
B_CELL_NAIVE_56
95.8
B_CELL_NAIVE_57
95.1
B_CELL_NAIVE_58
94.9
B_CELL_NAIVE_59
94.7
B_CELL_NAIVE_60
94.1
B_CELL_NAIVE_61
93.6
B_CELL_NAIVE_62
93.6
B_CELL_NAIVE_63
93.2
B_CELL_NAIVE_64
93.0
B_CELL_NAIVE_65
92.7
B_CELL_NAIVE_66
92.5
B_CELL_NAIVE_67
92.5
B_CELL_NAIVE_68
91.8
B_CELL_NAIVE_69
91.8
B_CELL_NAIVE_70
91.4
B_CELL_NAIVE_71
90.6
B_CELL_NAIVE_72
90.1
B_CELL_NAIVE_73
88.0
B_CELL_NAIVE_74
85.9
B_CELL_NAIVE_75
84.5
B_CELL_NAIVE_76
84.0
B_CELL_NAIVE_77
83.7
B_CELL_NAIVE_78
81.1
B_CELL_NAIVE_79
79.9
B_CELL_NAIVE_80
76.5
B_CELL_NAIVE_81
76.4
B_CELL_NAIVE_82
76.3
B_CELL_NAIVE_83
75.6
B_CELL_NAIVE_84
75.0
B_CELL_NAIVE_85
74.2
B_CELL_NAIVE_86
68.0
B_CELL_NAIVE_87
66.7
B_CELL_NAIVE_88
66.5
B_CELL_NAIVE_89
65.8
B_CELL_NAIVE_90
53.4
B_CELL_NAIVE_91
50.5
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