A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.8
nTPM
Monaco:
4.9
nTPM
Schmiedel:
46.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.8
HPA sample
nTPM
NK-cell nTPM: 28.8
Samples: 6
Max nTPM: 49.0
Min nTPM: 0.0
P10809_1013
49.0
P10809_1033
27.0
P10809_1052
25.7
P10809_1071
32.8
P10809_1093
0.0
P10809_1103
38.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
Monaco sample
nTPM
NK-cell nTPM: 5.0
Samples: 4
Max nTPM: 11.4
Min nTPM: 0.0
RHH5316_R3683
0.0
RHH5224_R3596
11.4
RHH5253_R3625
2.6
RHH5282_R3654
5.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.5
Schmiedel sample id
TPM
NK-cell TPM: 46.5
Samples: 90
Max TPM: 80.5
Min TPM: 27.1
NK_1
80.5
NK_2
74.7
NK_3
72.5
NK_4
72.4
NK_5
68.6
NK_6
67.0
NK_7
66.4
NK_8
65.9
NK_9
65.4
NK_10
62.5
NK_11
59.7
NK_12
59.7
NK_13
59.6
NK_14
59.1
NK_15
59.0
NK_16
57.5
NK_17
56.3
NK_18
56.3
NK_19
55.8
NK_20
55.7
NK_21
54.9
NK_22
54.9
NK_23
54.1
NK_24
53.0
NK_25
52.1
NK_26
51.6
NK_27
51.2
NK_28
51.0
NK_29
50.4
NK_30
50.1
NK_31
49.7
NK_32
49.6
NK_33
49.2
NK_34
48.8
NK_35
48.6
NK_36
48.1
NK_37
47.9
NK_38
47.3
NK_39
47.0
NK_40
46.1
NK_41
46.0
NK_42
45.9
NK_43
45.9
NK_44
45.4
NK_45
45.3
NK_46
44.9
NK_47
44.8
NK_48
44.2
NK_49
44.2
NK_50
44.0
NK_51
44.0
NK_52
43.6
NK_53
43.6
NK_54
43.0
NK_55
42.8
NK_56
42.8
NK_57
41.9
NK_58
41.7
NK_59
40.8
NK_60
40.7
NK_61
40.6
NK_62
40.6
NK_63
39.9
NK_64
39.8
NK_65
39.4
NK_66
39.1
NK_67
38.3
NK_68
37.2
NK_69
37.1
NK_70
36.2
NK_71
35.8
NK_72
35.6
NK_73
35.6
NK_74
35.4
NK_75
35.1
NK_76
34.6
NK_77
34.3
NK_78
33.9
NK_79
31.9
NK_80
31.6
NK_81
31.6
NK_82
31.3
NK_83
31.1
NK_84
31.0
NK_85
30.5
NK_86
30.1
NK_87
29.6
NK_88
28.6
NK_89
28.3
NK_90
27.1
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