A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.9
nTPM
Monaco:
7.6
nTPM
Schmiedel:
63.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
HPA sample
nTPM
Classical monocyte nTPM: 9.6
Samples: 6
Max nTPM: 13.6
Min nTPM: 5.9
P10809_1003
5.9
P10809_1020
9.6
P10809_1039
6.0
P10809_1058
10.1
P10809_1080
13.6
P10809_1107
12.4
Intermediate monocyte nTPM: 12.6
Samples: 6
Max nTPM: 20.8
Min nTPM: 7.7
P10809_1004
7.7
P10809_1023
14.8
P10809_1042
12.3
P10809_1061
8.9
P10809_1081
11.4
P10809_1108
20.8
Non-classical monocyte nTPM: 17.9
Samples: 5
Max nTPM: 27.7
Min nTPM: 9.5
P10809_1005
11.6
P10809_1053
9.5
P10809_1072
24.5
P10809_1082
16.3
P10809_1109
27.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
Monaco sample
nTPM
Classical monocyte nTPM: 3.4
Samples: 4
Max nTPM: 8.6
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
1.6
RHH5250_R3622
8.6
RHH5279_R3651
3.5
Intermediate monocyte nTPM: 7.6
Samples: 4
Max nTPM: 10.7
Min nTPM: 4.3
RHH5314_R3681
10.7
RHH5222_R3594
4.3
RHH5251_R3623
7.9
RHH5280_R3652
7.3
Non-classical monocyte nTPM: 7.6
Samples: 4
Max nTPM: 13.0
Min nTPM: 2.9
RHH5315_R3682
13.0
RHH5223_R3595
7.8
RHH5252_R3624
6.8
RHH5281_R3653
2.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.3
Schmiedel sample id
TPM
Classical monocyte TPM: 50.6
Samples: 91
Max TPM: 70.5
Min TPM: 29.1
MONOCYTES_1
70.5
MONOCYTES_2
69.8
MONOCYTES_3
66.3
MONOCYTES_4
64.6
MONOCYTES_5
64.5
MONOCYTES_6
63.3
MONOCYTES_7
63.2
MONOCYTES_8
63.2
MONOCYTES_9
62.1
MONOCYTES_10
61.4
MONOCYTES_11
61.1
MONOCYTES_12
59.9
MONOCYTES_13
59.4
MONOCYTES_14
58.5
MONOCYTES_15
58.0
MONOCYTES_16
57.7
MONOCYTES_17
57.6
MONOCYTES_18
57.3
MONOCYTES_19
57.3
MONOCYTES_20
57.2
MONOCYTES_21
57.0
MONOCYTES_22
56.9
MONOCYTES_23
56.5
MONOCYTES_24
56.3
MONOCYTES_25
56.2
MONOCYTES_26
55.7
MONOCYTES_27
55.6
MONOCYTES_28
55.5
MONOCYTES_29
55.3
MONOCYTES_30
54.8
MONOCYTES_31
54.8
MONOCYTES_32
54.0
MONOCYTES_33
53.8
MONOCYTES_34
53.8
MONOCYTES_35
51.4
MONOCYTES_36
51.2
MONOCYTES_37
50.9
MONOCYTES_38
50.9
MONOCYTES_39
50.7
MONOCYTES_40
50.4
MONOCYTES_41
50.3
MONOCYTES_42
50.2
MONOCYTES_43
50.2
MONOCYTES_44
50.2
MONOCYTES_45
50.0
MONOCYTES_46
49.8
MONOCYTES_47
49.6
MONOCYTES_48
49.5
MONOCYTES_49
49.3
MONOCYTES_50
49.0
MONOCYTES_51
49.0
MONOCYTES_52
49.0
MONOCYTES_53
48.9
MONOCYTES_54
48.6
MONOCYTES_55
48.4
MONOCYTES_56
48.1
MONOCYTES_57
47.9
MONOCYTES_58
47.9
MONOCYTES_59
47.6
MONOCYTES_60
47.5
MONOCYTES_61
47.3
MONOCYTES_62
47.2
MONOCYTES_63
47.1
MONOCYTES_64
46.9
MONOCYTES_65
46.9
MONOCYTES_66
46.5
MONOCYTES_67
46.4
MONOCYTES_68
45.7
MONOCYTES_69
45.5
MONOCYTES_70
45.3
MONOCYTES_71
44.8
MONOCYTES_72
44.7
MONOCYTES_73
44.5
MONOCYTES_74
44.4
MONOCYTES_75
44.3
MONOCYTES_76
43.9
MONOCYTES_77
43.1
MONOCYTES_78
42.7
MONOCYTES_79
42.7
MONOCYTES_80
41.0
MONOCYTES_81
40.7
MONOCYTES_82
40.6
MONOCYTES_83
39.7
MONOCYTES_84
38.9
MONOCYTES_85
38.1
MONOCYTES_86
37.4
MONOCYTES_87
37.2
MONOCYTES_88
37.1
MONOCYTES_89
36.1
MONOCYTES_90
36.1
MONOCYTES_91
29.1
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Non-classical monocyte TPM: 63.3
Samples: 90
Max TPM: 100.4
Min TPM: 37.0
M2_1
100.4
M2_2
96.9
M2_3
93.5
M2_4
92.0
M2_5
89.6
M2_6
89.1
M2_7
88.9
M2_8
88.8
M2_9
88.8
M2_10
88.3
M2_11
87.4
M2_12
80.9
M2_13
79.9
M2_14
79.6
M2_15
79.4
M2_16
79.0
M2_17
74.8
M2_18
71.9
M2_19
71.7
M2_20
71.5
M2_21
70.4
M2_22
70.1
M2_23
69.1
M2_24
68.5
M2_25
68.1
M2_26
68.1
M2_27
67.8
M2_28
67.6
M2_29
67.2
M2_30
66.6
M2_31
66.1
M2_32
65.6
M2_33
65.1
M2_34
65.0
M2_35
64.2
M2_36
64.0
M2_37
63.0
M2_38
62.9
M2_39
62.9
M2_40
62.7
M2_41
62.3
M2_42
61.7
M2_43
61.7
M2_44
61.6
M2_45
61.5
M2_46
61.0
M2_47
60.1
M2_48
60.0
M2_49
59.8
M2_50
59.0
M2_51
58.9
M2_52
58.8
M2_53
58.8
M2_54
58.7
M2_55
58.5
M2_56
58.5
M2_57
57.6
M2_58
57.1
M2_59
56.9
M2_60
55.6
M2_61
55.4
M2_62
55.2
M2_63
55.2
M2_64
54.8
M2_65
54.5
M2_66
54.1
M2_67
53.9
M2_68
53.9
M2_69
53.5
M2_70
52.7
M2_71
52.0
M2_72
51.9
M2_73
51.5
M2_74
50.6
M2_75
50.5
M2_76
50.0
M2_77
49.5
M2_78
48.9
M2_79
48.3
M2_80
47.7
M2_81
47.2
M2_82
47.1
M2_83
46.7
M2_84
46.3
M2_85
46.0
M2_86
45.7
M2_87
45.7
M2_88
45.6
M2_89
41.8
M2_90
37.0
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