A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
790.1
nTPM
Monaco:
982.1
nTPM
Schmiedel:
208.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
790.1
HPA sample
nTPM
Memory B-cell nTPM: 790.2
Samples: 6
Max nTPM: 1547.7
Min nTPM: 122.4
P10809_1017
192.7
P10809_1025
1379.1
P10809_1044
122.4
P10809_1063
192.0
P10809_1092
1307.0
P10809_1105
1547.7
Naive B-cell nTPM: 684.0
Samples: 6
Max nTPM: 1466.4
Min nTPM: 136.2
P10809_1011
190.6
P10809_1029
1065.9
P10809_1048
136.2
P10809_1067
190.2
P10809_1091
1054.8
P10809_1104
1466.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
982.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 817.7
Samples: 4
Max nTPM: 1391.5
Min nTPM: 35.0
RHH5310_R3677
1391.5
RHH5218_R3590
607.7
RHH5247_R3619
1236.4
RHH5276_R3648
35.0
Naive B-cell nTPM: 982.1
Samples: 4
Max nTPM: 2053.2
Min nTPM: 37.4
RHH5308_R3675
2053.2
RHH5216_R3588
890.0
RHH5245_R3617
947.8
RHH5274_R3646
37.4
Non-switched memory B-cell nTPM: 827.3
Samples: 4
Max nTPM: 1716.4
Min nTPM: 61.3
RHH5309_R3676
1716.4
RHH5217_R3589
920.2
RHH5246_R3618
611.4
RHH5275_R3647
61.3
Plasmablast nTPM: 588.9
Samples: 4
Max nTPM: 1115.8
Min nTPM: 25.2
RHH5312_R3679
1115.8
RHH5220_R3592
671.3
RHH5249_R3621
543.2
RHH5278_R3650
25.2
Switched memory B-cell nTPM: 941.5
Samples: 4
Max nTPM: 1988.2
Min nTPM: 22.8
RHH5311_R3678
1988.2
RHH5219_R3591
1350.5
RHH5248_R3620
404.5
RHH5277_R3649
22.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
208.6
Schmiedel sample id
TPM
Naive B-cell TPM: 208.6
Samples: 91
Max TPM: 523.9
Min TPM: 104.8
B_CELL_NAIVE_1
523.9
B_CELL_NAIVE_2
454.8
B_CELL_NAIVE_3
441.3
B_CELL_NAIVE_4
408.8
B_CELL_NAIVE_5
371.0
B_CELL_NAIVE_6
343.0
B_CELL_NAIVE_7
336.0
B_CELL_NAIVE_8
315.1
B_CELL_NAIVE_9
314.8
B_CELL_NAIVE_10
307.5
B_CELL_NAIVE_11
300.0
B_CELL_NAIVE_12
297.8
B_CELL_NAIVE_13
292.2
B_CELL_NAIVE_14
288.1
B_CELL_NAIVE_15
283.0
B_CELL_NAIVE_16
281.8
B_CELL_NAIVE_17
281.7
B_CELL_NAIVE_18
280.2
B_CELL_NAIVE_19
278.0
B_CELL_NAIVE_20
277.1
B_CELL_NAIVE_21
268.2
B_CELL_NAIVE_22
265.5
B_CELL_NAIVE_23
264.1
B_CELL_NAIVE_24
261.0
B_CELL_NAIVE_25
259.5
B_CELL_NAIVE_26
258.8
B_CELL_NAIVE_27
258.5
B_CELL_NAIVE_28
256.6
B_CELL_NAIVE_29
256.3
B_CELL_NAIVE_30
256.2
B_CELL_NAIVE_31
251.7
B_CELL_NAIVE_32
251.2
B_CELL_NAIVE_33
250.4
B_CELL_NAIVE_34
247.1
B_CELL_NAIVE_35
245.2
B_CELL_NAIVE_36
242.9
B_CELL_NAIVE_37
202.0
B_CELL_NAIVE_38
201.6
B_CELL_NAIVE_39
191.6
B_CELL_NAIVE_40
188.7
B_CELL_NAIVE_41
188.4
B_CELL_NAIVE_42
185.1
B_CELL_NAIVE_43
185.1
B_CELL_NAIVE_44
178.5
B_CELL_NAIVE_45
166.2
B_CELL_NAIVE_46
165.9
B_CELL_NAIVE_47
165.6
B_CELL_NAIVE_48
163.9
B_CELL_NAIVE_49
163.1
B_CELL_NAIVE_50
161.3
B_CELL_NAIVE_51
160.5
B_CELL_NAIVE_52
160.5
B_CELL_NAIVE_53
158.1
B_CELL_NAIVE_54
157.4
B_CELL_NAIVE_55
156.3
B_CELL_NAIVE_56
154.5
B_CELL_NAIVE_57
153.0
B_CELL_NAIVE_58
150.7
B_CELL_NAIVE_59
150.2
B_CELL_NAIVE_60
148.6
B_CELL_NAIVE_61
148.6
B_CELL_NAIVE_62
147.8
B_CELL_NAIVE_63
146.1
B_CELL_NAIVE_64
146.0
B_CELL_NAIVE_65
145.5
B_CELL_NAIVE_66
145.2
B_CELL_NAIVE_67
144.2
B_CELL_NAIVE_68
143.6
B_CELL_NAIVE_69
142.4
B_CELL_NAIVE_70
142.1
B_CELL_NAIVE_71
141.4
B_CELL_NAIVE_72
141.3
B_CELL_NAIVE_73
140.4
B_CELL_NAIVE_74
140.1
B_CELL_NAIVE_75
139.7
B_CELL_NAIVE_76
139.2
B_CELL_NAIVE_77
138.6
B_CELL_NAIVE_78
136.9
B_CELL_NAIVE_79
134.5
B_CELL_NAIVE_80
134.3
B_CELL_NAIVE_81
127.9
B_CELL_NAIVE_82
127.5
B_CELL_NAIVE_83
127.0
B_CELL_NAIVE_84
124.5
B_CELL_NAIVE_85
123.0
B_CELL_NAIVE_86
121.6
B_CELL_NAIVE_87
120.7
B_CELL_NAIVE_88
119.3
B_CELL_NAIVE_89
114.9
B_CELL_NAIVE_90
109.8
B_CELL_NAIVE_91
104.8
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