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BETA
  • SUMMARY

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  • BRAIN

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  • RPL9
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:790.1 nTPM
Monaco:982.1 nTPM
Schmiedel:208.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

790.1
HPA sample nTPM
Memory B-cell
nTPM: 790.2
Samples: 6

Max nTPM: 1547.7
Min nTPM: 122.4
P10809_1017 192.7
P10809_1025 1379.1
P10809_1044 122.4
P10809_1063 192.0
P10809_1092 1307.0
P10809_1105 1547.7
Naive B-cell
nTPM: 684.0
Samples: 6

Max nTPM: 1466.4
Min nTPM: 136.2
P10809_1011 190.6
P10809_1029 1065.9
P10809_1048 136.2
P10809_1067 190.2
P10809_1091 1054.8
P10809_1104 1466.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

982.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 817.7
Samples: 4

Max nTPM: 1391.5
Min nTPM: 35.0
RHH5310_R3677 1391.5
RHH5218_R3590 607.7
RHH5247_R3619 1236.4
RHH5276_R3648 35.0
Naive B-cell
nTPM: 982.1
Samples: 4

Max nTPM: 2053.2
Min nTPM: 37.4
RHH5308_R3675 2053.2
RHH5216_R3588 890.0
RHH5245_R3617 947.8
RHH5274_R3646 37.4
Non-switched memory B-cell
nTPM: 827.3
Samples: 4

Max nTPM: 1716.4
Min nTPM: 61.3
RHH5309_R3676 1716.4
RHH5217_R3589 920.2
RHH5246_R3618 611.4
RHH5275_R3647 61.3
Plasmablast
nTPM: 588.9
Samples: 4

Max nTPM: 1115.8
Min nTPM: 25.2
RHH5312_R3679 1115.8
RHH5220_R3592 671.3
RHH5249_R3621 543.2
RHH5278_R3650 25.2
Switched memory B-cell
nTPM: 941.5
Samples: 4

Max nTPM: 1988.2
Min nTPM: 22.8
RHH5311_R3678 1988.2
RHH5219_R3591 1350.5
RHH5248_R3620 404.5
RHH5277_R3649 22.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

208.6
Schmiedel sample id TPM
Naive B-cell
TPM: 208.6
Samples: 91

Max TPM: 523.9
Min TPM: 104.8
B_CELL_NAIVE_1 523.9
B_CELL_NAIVE_2 454.8
B_CELL_NAIVE_3 441.3
B_CELL_NAIVE_4 408.8
B_CELL_NAIVE_5 371.0
B_CELL_NAIVE_6 343.0
B_CELL_NAIVE_7 336.0
B_CELL_NAIVE_8 315.1
B_CELL_NAIVE_9 314.8
B_CELL_NAIVE_10 307.5
B_CELL_NAIVE_11 300.0
B_CELL_NAIVE_12 297.8
B_CELL_NAIVE_13 292.2
B_CELL_NAIVE_14 288.1
B_CELL_NAIVE_15 283.0
B_CELL_NAIVE_16 281.8
B_CELL_NAIVE_17 281.7
B_CELL_NAIVE_18 280.2
B_CELL_NAIVE_19 278.0
B_CELL_NAIVE_20 277.1
B_CELL_NAIVE_21 268.2
B_CELL_NAIVE_22 265.5
B_CELL_NAIVE_23 264.1
B_CELL_NAIVE_24 261.0
B_CELL_NAIVE_25 259.5
B_CELL_NAIVE_26 258.8
B_CELL_NAIVE_27 258.5
B_CELL_NAIVE_28 256.6
B_CELL_NAIVE_29 256.3
B_CELL_NAIVE_30 256.2
B_CELL_NAIVE_31 251.7
B_CELL_NAIVE_32 251.2
B_CELL_NAIVE_33 250.4
B_CELL_NAIVE_34 247.1
B_CELL_NAIVE_35 245.2
B_CELL_NAIVE_36 242.9
B_CELL_NAIVE_37 202.0
B_CELL_NAIVE_38 201.6
B_CELL_NAIVE_39 191.6
B_CELL_NAIVE_40 188.7
B_CELL_NAIVE_41 188.4
B_CELL_NAIVE_42 185.1
B_CELL_NAIVE_43 185.1
B_CELL_NAIVE_44 178.5
B_CELL_NAIVE_45 166.2
B_CELL_NAIVE_46 165.9
B_CELL_NAIVE_47 165.6
B_CELL_NAIVE_48 163.9
B_CELL_NAIVE_49 163.1
B_CELL_NAIVE_50 161.3
B_CELL_NAIVE_51 160.5
B_CELL_NAIVE_52 160.5
B_CELL_NAIVE_53 158.1
B_CELL_NAIVE_54 157.4
B_CELL_NAIVE_55 156.3
B_CELL_NAIVE_56 154.5
B_CELL_NAIVE_57 153.0
B_CELL_NAIVE_58 150.7
B_CELL_NAIVE_59 150.2
B_CELL_NAIVE_60 148.6
B_CELL_NAIVE_61 148.6
B_CELL_NAIVE_62 147.8
B_CELL_NAIVE_63 146.1
B_CELL_NAIVE_64 146.0
B_CELL_NAIVE_65 145.5
B_CELL_NAIVE_66 145.2
B_CELL_NAIVE_67 144.2
B_CELL_NAIVE_68 143.6
B_CELL_NAIVE_69 142.4
B_CELL_NAIVE_70 142.1
B_CELL_NAIVE_71 141.4
B_CELL_NAIVE_72 141.3
B_CELL_NAIVE_73 140.4
B_CELL_NAIVE_74 140.1
B_CELL_NAIVE_75 139.7
B_CELL_NAIVE_76 139.2
B_CELL_NAIVE_77 138.6
B_CELL_NAIVE_78 136.9
B_CELL_NAIVE_79 134.5
B_CELL_NAIVE_80 134.3
B_CELL_NAIVE_81 127.9
B_CELL_NAIVE_82 127.5
B_CELL_NAIVE_83 127.0
B_CELL_NAIVE_84 124.5
B_CELL_NAIVE_85 123.0
B_CELL_NAIVE_86 121.6
B_CELL_NAIVE_87 120.7
B_CELL_NAIVE_88 119.3
B_CELL_NAIVE_89 114.9
B_CELL_NAIVE_90 109.8
B_CELL_NAIVE_91 104.8
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