A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
351.0
nTPM
Monaco:
523.7
nTPM
Schmiedel:
78.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
351.0
HPA sample
nTPM
Classical monocyte nTPM: 319.0
Samples: 6
Max nTPM: 674.6
Min nTPM: 66.6
P10809_1003
122.0
P10809_1020
512.8
P10809_1039
66.6
P10809_1058
95.8
P10809_1080
442.1
P10809_1107
674.6
Intermediate monocyte nTPM: 350.9
Samples: 6
Max nTPM: 823.3
Min nTPM: 70.7
P10809_1004
79.8
P10809_1023
545.0
P10809_1042
98.1
P10809_1061
70.7
P10809_1081
488.7
P10809_1108
823.3
Non-classical monocyte nTPM: 252.6
Samples: 5
Max nTPM: 652.4
Min nTPM: 36.9
P10809_1005
81.5
P10809_1053
62.8
P10809_1072
36.9
P10809_1082
429.3
P10809_1109
652.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
523.7
Monaco sample
nTPM
Classical monocyte nTPM: 408.4
Samples: 4
Max nTPM: 738.7
Min nTPM: 37.1
RHH5313_R3680
738.7
RHH5221_R3593
468.1
RHH5250_R3622
389.7
RHH5279_R3651
37.1
Intermediate monocyte nTPM: 523.7
Samples: 4
Max nTPM: 935.5
Min nTPM: 20.5
RHH5314_R3681
935.5
RHH5222_R3594
709.0
RHH5251_R3623
429.8
RHH5280_R3652
20.5
Non-classical monocyte nTPM: 334.8
Samples: 4
Max nTPM: 627.7
Min nTPM: 18.5
RHH5315_R3682
627.7
RHH5223_R3595
414.5
RHH5252_R3624
278.3
RHH5281_R3653
18.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.0
Schmiedel sample id
TPM
Classical monocyte TPM: 77.6
Samples: 91
Max TPM: 158.4
Min TPM: 42.8
MONOCYTES_1
158.4
MONOCYTES_2
158.0
MONOCYTES_3
154.2
MONOCYTES_4
151.3
MONOCYTES_5
148.4
MONOCYTES_6
136.0
MONOCYTES_7
123.8
MONOCYTES_8
123.2
MONOCYTES_9
114.8
MONOCYTES_10
113.6
MONOCYTES_11
110.6
MONOCYTES_12
110.2
MONOCYTES_13
108.6
MONOCYTES_14
104.7
MONOCYTES_15
104.6
MONOCYTES_16
104.3
MONOCYTES_17
104.1
MONOCYTES_18
104.1
MONOCYTES_19
103.1
MONOCYTES_20
102.8
MONOCYTES_21
100.9
MONOCYTES_22
100.7
MONOCYTES_23
99.5
MONOCYTES_24
99.5
MONOCYTES_25
97.6
MONOCYTES_26
96.8
MONOCYTES_27
95.7
MONOCYTES_28
95.4
MONOCYTES_29
95.2
MONOCYTES_30
94.3
MONOCYTES_31
92.7
MONOCYTES_32
90.9
MONOCYTES_33
87.1
MONOCYTES_34
86.3
MONOCYTES_35
84.0
MONOCYTES_36
82.0
MONOCYTES_37
80.2
MONOCYTES_38
76.3
MONOCYTES_39
74.2
MONOCYTES_40
72.9
MONOCYTES_41
72.5
MONOCYTES_42
71.7
MONOCYTES_43
67.9
MONOCYTES_44
65.9
MONOCYTES_45
65.6
MONOCYTES_46
65.1
MONOCYTES_47
63.9
MONOCYTES_48
63.2
MONOCYTES_49
61.7
MONOCYTES_50
61.0
MONOCYTES_51
60.5
MONOCYTES_52
59.7
MONOCYTES_53
59.6
MONOCYTES_54
59.6
MONOCYTES_55
58.7
MONOCYTES_56
58.5
MONOCYTES_57
57.4
MONOCYTES_58
56.9
MONOCYTES_59
56.8
MONOCYTES_60
56.5
MONOCYTES_61
56.5
MONOCYTES_62
56.3
MONOCYTES_63
56.1
MONOCYTES_64
55.4
MONOCYTES_65
55.2
MONOCYTES_66
54.7
MONOCYTES_67
54.4
MONOCYTES_68
54.0
MONOCYTES_69
52.4
MONOCYTES_70
51.8
MONOCYTES_71
51.8
MONOCYTES_72
51.7
MONOCYTES_73
51.4
MONOCYTES_74
51.3
MONOCYTES_75
51.0
MONOCYTES_76
50.6
MONOCYTES_77
50.3
MONOCYTES_78
50.2
MONOCYTES_79
50.2
MONOCYTES_80
50.1
MONOCYTES_81
49.6
MONOCYTES_82
49.3
MONOCYTES_83
48.9
MONOCYTES_84
48.8
MONOCYTES_85
48.5
MONOCYTES_86
48.3
MONOCYTES_87
48.1
MONOCYTES_88
47.8
MONOCYTES_89
46.8
MONOCYTES_90
43.8
MONOCYTES_91
42.8
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Non-classical monocyte TPM: 78.0
Samples: 90
Max TPM: 189.0
Min TPM: 36.4
M2_1
189.0
M2_2
184.8
M2_3
159.7
M2_4
156.0
M2_5
152.5
M2_6
137.9
M2_7
128.6
M2_8
127.9
M2_9
126.1
M2_10
121.5
M2_11
121.3
M2_12
116.7
M2_13
114.1
M2_14
108.6
M2_15
107.6
M2_16
106.8
M2_17
105.8
M2_18
105.3
M2_19
105.0
M2_20
104.1
M2_21
102.7
M2_22
100.0
M2_23
98.9
M2_24
97.4
M2_25
96.3
M2_26
96.0
M2_27
94.6
M2_28
92.6
M2_29
92.4
M2_30
90.7
M2_31
89.8
M2_32
89.2
M2_33
88.1
M2_34
87.1
M2_35
86.7
M2_36
85.5
M2_37
83.7
M2_38
70.0
M2_39
66.2
M2_40
65.0
M2_41
64.7
M2_42
64.5
M2_43
64.0
M2_44
63.6
M2_45
63.2
M2_46
61.9
M2_47
60.8
M2_48
60.6
M2_49
59.4
M2_50
59.1
M2_51
58.7
M2_52
58.3
M2_53
58.2
M2_54
57.9
M2_55
57.7
M2_56
57.6
M2_57
57.2
M2_58
56.3
M2_59
56.2
M2_60
55.3
M2_61
55.3
M2_62
55.1
M2_63
54.0
M2_64
53.6
M2_65
53.1
M2_66
53.1
M2_67
52.6
M2_68
52.2
M2_69
52.1
M2_70
51.7
M2_71
51.6
M2_72
51.2
M2_73
50.6
M2_74
50.6
M2_75
49.5
M2_76
49.2
M2_77
49.2
M2_78
48.7
M2_79
48.5
M2_80
48.2
M2_81
47.7
M2_82
46.3
M2_83
46.1
M2_84
45.7
M2_85
45.5
M2_86
45.1
M2_87
44.8
M2_88
43.8
M2_89
43.5
M2_90
36.4
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