A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
483.7
nTPM
Monaco:
286.6
nTPM
Schmiedel:
88.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
483.7
HPA sample
nTPM
NK-cell nTPM: 483.7
Samples: 6
Max nTPM: 1045.9
Min nTPM: 91.2
P10809_1013
280.0
P10809_1033
857.8
P10809_1052
91.2
P10809_1071
176.4
P10809_1093
451.1
P10809_1103
1045.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
286.6
Monaco sample
nTPM
NK-cell nTPM: 286.6
Samples: 4
Max nTPM: 533.1
Min nTPM: 24.7
RHH5316_R3683
533.1
RHH5224_R3596
409.3
RHH5253_R3625
179.1
RHH5282_R3654
24.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.5
Schmiedel sample id
TPM
NK-cell TPM: 88.5
Samples: 90
Max TPM: 194.8
Min TPM: 41.8
NK_1
194.8
NK_2
160.5
NK_3
157.3
NK_4
151.1
NK_5
148.5
NK_6
145.8
NK_7
140.1
NK_8
139.2
NK_9
137.4
NK_10
136.9
NK_11
136.4
NK_12
129.2
NK_13
128.3
NK_14
127.6
NK_15
125.9
NK_16
123.6
NK_17
123.1
NK_18
120.7
NK_19
115.0
NK_20
114.8
NK_21
114.0
NK_22
111.9
NK_23
111.5
NK_24
107.4
NK_25
107.1
NK_26
105.9
NK_27
103.2
NK_28
102.6
NK_29
101.1
NK_30
100.2
NK_31
100.1
NK_32
98.8
NK_33
96.1
NK_34
96.1
NK_35
94.7
NK_36
93.1
NK_37
92.5
NK_38
88.2
NK_39
87.9
NK_40
87.4
NK_41
87.4
NK_42
85.9
NK_43
84.3
NK_44
83.5
NK_45
83.1
NK_46
82.4
NK_47
80.1
NK_48
79.0
NK_49
78.3
NK_50
77.8
NK_51
76.6
NK_52
75.2
NK_53
74.4
NK_54
73.8
NK_55
72.0
NK_56
71.5
NK_57
69.1
NK_58
68.9
NK_59
68.1
NK_60
68.0
NK_61
67.8
NK_62
65.7
NK_63
65.5
NK_64
65.3
NK_65
63.7
NK_66
63.2
NK_67
62.6
NK_68
62.0
NK_69
60.1
NK_70
60.0
NK_71
59.1
NK_72
59.0
NK_73
57.9
NK_74
56.7
NK_75
56.3
NK_76
54.7
NK_77
54.5
NK_78
54.4
NK_79
51.8
NK_80
51.8
NK_81
51.6
NK_82
50.5
NK_83
50.2
NK_84
49.5
NK_85
48.7
NK_86
48.4
NK_87
47.6
NK_88
46.5
NK_89
44.8
NK_90
41.8
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