A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
64.0
nTPM
Schmiedel:
26.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
Memory B-cell nTPM: 6.2
Samples: 6
Max nTPM: 8.3
Min nTPM: 3.5
P10809_1017
8.3
P10809_1025
3.5
P10809_1044
7.0
P10809_1063
4.5
P10809_1092
5.9
P10809_1105
8.1
Naive B-cell nTPM: 6.6
Samples: 6
Max nTPM: 8.3
Min nTPM: 3.7
P10809_1011
6.1
P10809_1029
3.7
P10809_1048
6.7
P10809_1067
6.8
P10809_1091
8.3
P10809_1104
7.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 44.0
Samples: 4
Max nTPM: 53.2
Min nTPM: 40.1
RHH5310_R3677
40.3
RHH5218_R3590
40.1
RHH5247_R3619
53.2
RHH5276_R3648
42.5
Naive B-cell nTPM: 31.6
Samples: 4
Max nTPM: 37.8
Min nTPM: 27.0
RHH5308_R3675
27.0
RHH5216_R3588
29.4
RHH5245_R3617
32.0
RHH5274_R3646
37.8
Non-switched memory B-cell nTPM: 36.8
Samples: 4
Max nTPM: 46.7
Min nTPM: 27.2
RHH5309_R3676
34.5
RHH5217_R3589
38.7
RHH5246_R3618
27.2
RHH5275_R3647
46.7
Plasmablast nTPM: 64.1
Samples: 4
Max nTPM: 74.2
Min nTPM: 49.8
RHH5312_R3679
60.0
RHH5220_R3592
49.8
RHH5249_R3621
74.2
RHH5278_R3650
72.3
Switched memory B-cell nTPM: 43.1
Samples: 4
Max nTPM: 45.8
Min nTPM: 39.7
RHH5311_R3678
39.7
RHH5219_R3591
42.0
RHH5248_R3620
44.8
RHH5277_R3649
45.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
Schmiedel sample id
TPM
Naive B-cell TPM: 26.9
Samples: 91
Max TPM: 35.6
Min TPM: 16.0
B_CELL_NAIVE_1
35.6
B_CELL_NAIVE_2
33.4
B_CELL_NAIVE_3
33.3
B_CELL_NAIVE_4
33.3
B_CELL_NAIVE_5
33.1
B_CELL_NAIVE_6
32.7
B_CELL_NAIVE_7
32.6
B_CELL_NAIVE_8
31.5
B_CELL_NAIVE_9
31.5
B_CELL_NAIVE_10
31.5
B_CELL_NAIVE_11
31.3
B_CELL_NAIVE_12
30.9
B_CELL_NAIVE_13
30.6
B_CELL_NAIVE_14
30.4
B_CELL_NAIVE_15
30.1
B_CELL_NAIVE_16
30.0
B_CELL_NAIVE_17
30.0
B_CELL_NAIVE_18
29.9
B_CELL_NAIVE_19
29.9
B_CELL_NAIVE_20
29.4
B_CELL_NAIVE_21
29.4
B_CELL_NAIVE_22
28.9
B_CELL_NAIVE_23
28.7
B_CELL_NAIVE_24
28.6
B_CELL_NAIVE_25
28.5
B_CELL_NAIVE_26
28.4
B_CELL_NAIVE_27
28.3
B_CELL_NAIVE_28
28.1
B_CELL_NAIVE_29
28.1
B_CELL_NAIVE_30
28.1
B_CELL_NAIVE_31
27.9
B_CELL_NAIVE_32
27.9
B_CELL_NAIVE_33
27.8
B_CELL_NAIVE_34
27.8
B_CELL_NAIVE_35
27.8
B_CELL_NAIVE_36
27.8
B_CELL_NAIVE_37
27.7
B_CELL_NAIVE_38
27.7
B_CELL_NAIVE_39
27.6
B_CELL_NAIVE_40
27.6
B_CELL_NAIVE_41
27.5
B_CELL_NAIVE_42
27.4
B_CELL_NAIVE_43
27.3
B_CELL_NAIVE_44
27.3
B_CELL_NAIVE_45
27.1
B_CELL_NAIVE_46
27.1
B_CELL_NAIVE_47
27.1
B_CELL_NAIVE_48
26.9
B_CELL_NAIVE_49
26.9
B_CELL_NAIVE_50
26.9
B_CELL_NAIVE_51
26.7
B_CELL_NAIVE_52
26.7
B_CELL_NAIVE_53
26.6
B_CELL_NAIVE_54
26.4
B_CELL_NAIVE_55
26.0
B_CELL_NAIVE_56
25.8
B_CELL_NAIVE_57
25.8
B_CELL_NAIVE_58
25.8
B_CELL_NAIVE_59
25.6
B_CELL_NAIVE_60
25.6
B_CELL_NAIVE_61
25.6
B_CELL_NAIVE_62
25.5
B_CELL_NAIVE_63
25.4
B_CELL_NAIVE_64
25.3
B_CELL_NAIVE_65
25.0
B_CELL_NAIVE_66
25.0
B_CELL_NAIVE_67
25.0
B_CELL_NAIVE_68
24.9
B_CELL_NAIVE_69
24.8
B_CELL_NAIVE_70
24.7
B_CELL_NAIVE_71
24.5
B_CELL_NAIVE_72
24.5
B_CELL_NAIVE_73
24.5
B_CELL_NAIVE_74
24.4
B_CELL_NAIVE_75
24.3
B_CELL_NAIVE_76
24.3
B_CELL_NAIVE_77
24.2
B_CELL_NAIVE_78
24.1
B_CELL_NAIVE_79
23.8
B_CELL_NAIVE_80
23.1
B_CELL_NAIVE_81
22.7
B_CELL_NAIVE_82
22.7
B_CELL_NAIVE_83
22.1
B_CELL_NAIVE_84
22.1
B_CELL_NAIVE_85
21.5
B_CELL_NAIVE_86
21.3
B_CELL_NAIVE_87
21.3
B_CELL_NAIVE_88
19.9
B_CELL_NAIVE_89
18.6
B_CELL_NAIVE_90
16.5
B_CELL_NAIVE_91
16.0
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