A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.1
nTPM
Monaco:
67.1
nTPM
Schmiedel:
49.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.1
HPA sample
nTPM
Classical monocyte nTPM: 7.2
Samples: 6
Max nTPM: 9.3
Min nTPM: 4.0
P10809_1003
7.1
P10809_1020
4.0
P10809_1039
6.1
P10809_1058
7.6
P10809_1080
9.3
P10809_1107
9.2
Intermediate monocyte nTPM: 7.9
Samples: 6
Max nTPM: 11.8
Min nTPM: 4.1
P10809_1004
11.8
P10809_1023
4.1
P10809_1042
9.3
P10809_1061
5.5
P10809_1081
8.6
P10809_1108
8.3
Non-classical monocyte nTPM: 12.1
Samples: 5
Max nTPM: 18.7
Min nTPM: 8.8
P10809_1005
9.7
P10809_1053
12.8
P10809_1072
18.7
P10809_1082
10.7
P10809_1109
8.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.1
Monaco sample
nTPM
Classical monocyte nTPM: 56.4
Samples: 4
Max nTPM: 66.3
Min nTPM: 40.8
RHH5313_R3680
40.8
RHH5221_R3593
57.3
RHH5250_R3622
66.3
RHH5279_R3651
61.4
Intermediate monocyte nTPM: 54.9
Samples: 4
Max nTPM: 69.5
Min nTPM: 39.2
RHH5314_R3681
39.2
RHH5222_R3594
47.2
RHH5251_R3623
69.5
RHH5280_R3652
63.8
Non-classical monocyte nTPM: 67.2
Samples: 4
Max nTPM: 76.9
Min nTPM: 58.9
RHH5315_R3682
58.9
RHH5223_R3595
76.9
RHH5252_R3624
62.6
RHH5281_R3653
70.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.1
Schmiedel sample id
TPM
Classical monocyte TPM: 34.3
Samples: 91
Max TPM: 68.5
Min TPM: 18.5
MONOCYTES_1
68.5
MONOCYTES_2
52.9
MONOCYTES_3
52.0
MONOCYTES_4
51.2
MONOCYTES_5
50.8
MONOCYTES_6
50.7
MONOCYTES_7
49.7
MONOCYTES_8
48.3
MONOCYTES_9
46.9
MONOCYTES_10
44.2
MONOCYTES_11
43.6
MONOCYTES_12
43.1
MONOCYTES_13
42.9
MONOCYTES_14
42.3
MONOCYTES_15
42.2
MONOCYTES_16
42.0
MONOCYTES_17
41.3
MONOCYTES_18
41.1
MONOCYTES_19
40.6
MONOCYTES_20
40.0
MONOCYTES_21
39.7
MONOCYTES_22
39.2
MONOCYTES_23
39.1
MONOCYTES_24
39.0
MONOCYTES_25
38.9
MONOCYTES_26
38.6
MONOCYTES_27
38.6
MONOCYTES_28
37.9
MONOCYTES_29
37.3
MONOCYTES_30
37.2
MONOCYTES_31
37.2
MONOCYTES_32
37.1
MONOCYTES_33
36.4
MONOCYTES_34
36.2
MONOCYTES_35
35.6
MONOCYTES_36
35.1
MONOCYTES_37
34.8
MONOCYTES_38
34.7
MONOCYTES_39
34.5
MONOCYTES_40
33.7
MONOCYTES_41
33.3
MONOCYTES_42
33.2
MONOCYTES_43
33.1
MONOCYTES_44
33.0
MONOCYTES_45
32.4
MONOCYTES_46
32.3
MONOCYTES_47
32.0
MONOCYTES_48
31.9
MONOCYTES_49
31.8
MONOCYTES_50
31.5
MONOCYTES_51
31.4
MONOCYTES_52
31.2
MONOCYTES_53
31.1
MONOCYTES_54
31.1
MONOCYTES_55
31.1
MONOCYTES_56
30.9
MONOCYTES_57
30.7
MONOCYTES_58
30.0
MONOCYTES_59
29.9
MONOCYTES_60
29.6
MONOCYTES_61
29.4
MONOCYTES_62
29.3
MONOCYTES_63
29.2
MONOCYTES_64
29.2
MONOCYTES_65
29.2
MONOCYTES_66
29.0
MONOCYTES_67
29.0
MONOCYTES_68
28.9
MONOCYTES_69
28.4
MONOCYTES_70
28.3
MONOCYTES_71
28.2
MONOCYTES_72
27.9
MONOCYTES_73
27.7
MONOCYTES_74
27.4
MONOCYTES_75
27.4
MONOCYTES_76
27.1
MONOCYTES_77
26.9
MONOCYTES_78
26.7
MONOCYTES_79
26.4
MONOCYTES_80
26.3
MONOCYTES_81
25.7
MONOCYTES_82
25.2
MONOCYTES_83
24.1
MONOCYTES_84
23.7
MONOCYTES_85
23.6
MONOCYTES_86
23.3
MONOCYTES_87
22.8
MONOCYTES_88
22.6
MONOCYTES_89
22.5
MONOCYTES_90
20.8
MONOCYTES_91
18.5
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Non-classical monocyte TPM: 49.1
Samples: 90
Max TPM: 80.0
Min TPM: 30.7
M2_1
80.0
M2_2
65.0
M2_3
64.3
M2_4
62.2
M2_5
61.6
M2_6
61.5
M2_7
60.6
M2_8
60.5
M2_9
60.4
M2_10
59.8
M2_11
59.7
M2_12
59.6
M2_13
59.4
M2_14
59.3
M2_15
58.8
M2_16
58.5
M2_17
57.3
M2_18
57.3
M2_19
57.2
M2_20
55.4
M2_21
55.2
M2_22
55.1
M2_23
53.6
M2_24
53.5
M2_25
53.0
M2_26
52.9
M2_27
52.3
M2_28
51.7
M2_29
51.7
M2_30
51.6
M2_31
51.4
M2_32
51.4
M2_33
51.3
M2_34
51.3
M2_35
51.1
M2_36
50.9
M2_37
50.8
M2_38
50.6
M2_39
50.5
M2_40
50.2
M2_41
49.9
M2_42
49.7
M2_43
49.5
M2_44
49.2
M2_45
49.1
M2_46
49.0
M2_47
49.0
M2_48
48.0
M2_49
47.9
M2_50
47.8
M2_51
47.8
M2_52
47.2
M2_53
47.1
M2_54
46.4
M2_55
46.1
M2_56
46.1
M2_57
45.6
M2_58
45.4
M2_59
45.4
M2_60
45.4
M2_61
45.3
M2_62
45.1
M2_63
44.6
M2_64
44.2
M2_65
44.1
M2_66
43.8
M2_67
43.7
M2_68
43.4
M2_69
42.7
M2_70
42.4
M2_71
41.6
M2_72
41.2
M2_73
40.9
M2_74
40.7
M2_75
40.1
M2_76
40.0
M2_77
39.8
M2_78
39.6
M2_79
39.5
M2_80
39.2
M2_81
38.9
M2_82
38.8
M2_83
38.3
M2_84
38.3
M2_85
37.6
M2_86
37.4
M2_87
35.5
M2_88
34.7
M2_89
32.9
M2_90
30.7
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