A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.6
nTPM
Monaco:
72.7
nTPM
Schmiedel:
48.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.6
HPA sample
nTPM
NK-cell nTPM: 8.6
Samples: 6
Max nTPM: 12.0
Min nTPM: 1.9
P10809_1013
10.7
P10809_1033
1.9
P10809_1052
12.0
P10809_1071
7.9
P10809_1093
11.7
P10809_1103
7.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.7
Monaco sample
nTPM
NK-cell nTPM: 72.7
Samples: 4
Max nTPM: 77.3
Min nTPM: 64.3
RHH5316_R3683
64.3
RHH5224_R3596
77.3
RHH5253_R3625
73.3
RHH5282_R3654
75.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.2
Schmiedel sample id
TPM
NK-cell TPM: 48.2
Samples: 90
Max TPM: 81.0
Min TPM: 30.4
NK_1
81.0
NK_2
71.7
NK_3
70.5
NK_4
66.8
NK_5
62.4
NK_6
62.2
NK_7
61.8
NK_8
60.9
NK_9
60.8
NK_10
60.2
NK_11
58.7
NK_12
57.8
NK_13
57.4
NK_14
55.1
NK_15
55.1
NK_16
54.9
NK_17
54.7
NK_18
54.0
NK_19
53.5
NK_20
53.3
NK_21
53.0
NK_22
52.1
NK_23
52.1
NK_24
51.8
NK_25
51.8
NK_26
51.3
NK_27
51.2
NK_28
50.6
NK_29
50.4
NK_30
50.3
NK_31
50.1
NK_32
50.0
NK_33
50.0
NK_34
49.8
NK_35
49.1
NK_36
48.6
NK_37
48.2
NK_38
48.1
NK_39
48.0
NK_40
48.0
NK_41
47.7
NK_42
47.4
NK_43
47.3
NK_44
46.6
NK_45
46.6
NK_46
46.5
NK_47
46.4
NK_48
46.3
NK_49
46.3
NK_50
46.2
NK_51
45.9
NK_52
45.5
NK_53
45.2
NK_54
45.2
NK_55
44.6
NK_56
44.6
NK_57
44.4
NK_58
44.3
NK_59
44.2
NK_60
44.1
NK_61
44.0
NK_62
43.8
NK_63
43.8
NK_64
43.7
NK_65
43.7
NK_66
43.5
NK_67
43.2
NK_68
43.1
NK_69
43.0
NK_70
42.7
NK_71
42.5
NK_72
42.4
NK_73
42.0
NK_74
41.9
NK_75
41.8
NK_76
41.7
NK_77
41.1
NK_78
40.9
NK_79
40.9
NK_80
40.8
NK_81
39.5
NK_82
38.5
NK_83
37.9
NK_84
37.5
NK_85
37.4
NK_86
36.5
NK_87
34.1
NK_88
34.0
NK_89
33.0
NK_90
30.4
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