A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
35.1
nTPM
Schmiedel:
41.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Memory B-cell nTPM: 1.8
Samples: 6
Max nTPM: 3.1
Min nTPM: 0.1
P10809_1017
3.1
P10809_1025
2.0
P10809_1044
0.1
P10809_1063
0.6
P10809_1092
2.5
P10809_1105
2.2
Naive B-cell nTPM: 2.9
Samples: 6
Max nTPM: 3.6
Min nTPM: 2.2
P10809_1011
3.6
P10809_1029
2.8
P10809_1048
3.2
P10809_1067
2.4
P10809_1091
2.2
P10809_1104
3.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 30.6
Samples: 4
Max nTPM: 39.6
Min nTPM: 23.2
RHH5310_R3677
27.6
RHH5218_R3590
23.2
RHH5247_R3619
39.6
RHH5276_R3648
31.9
Naive B-cell nTPM: 35.1
Samples: 4
Max nTPM: 42.6
Min nTPM: 23.3
RHH5308_R3675
23.3
RHH5216_R3588
42.6
RHH5245_R3617
42.6
RHH5274_R3646
31.9
Non-switched memory B-cell nTPM: 34.5
Samples: 4
Max nTPM: 43.3
Min nTPM: 30.3
RHH5309_R3676
31.6
RHH5217_R3589
32.6
RHH5246_R3618
43.3
RHH5275_R3647
30.3
Plasmablast nTPM: 28.9
Samples: 4
Max nTPM: 35.7
Min nTPM: 21.3
RHH5312_R3679
21.3
RHH5220_R3592
35.7
RHH5249_R3621
30.6
RHH5278_R3650
27.9
Switched memory B-cell nTPM: 30.9
Samples: 4
Max nTPM: 35.4
Min nTPM: 24.9
RHH5311_R3678
24.9
RHH5219_R3591
30.2
RHH5248_R3620
33.3
RHH5277_R3649
35.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.3
Schmiedel sample id
TPM
Naive B-cell TPM: 41.4
Samples: 91
Max TPM: 51.0
Min TPM: 19.6
B_CELL_NAIVE_1
51.0
B_CELL_NAIVE_2
50.8
B_CELL_NAIVE_3
50.6
B_CELL_NAIVE_4
49.3
B_CELL_NAIVE_5
48.7
B_CELL_NAIVE_6
47.4
B_CELL_NAIVE_7
47.2
B_CELL_NAIVE_8
47.0
B_CELL_NAIVE_9
46.8
B_CELL_NAIVE_10
46.7
B_CELL_NAIVE_11
45.9
B_CELL_NAIVE_12
45.7
B_CELL_NAIVE_13
45.5
B_CELL_NAIVE_14
45.2
B_CELL_NAIVE_15
45.0
B_CELL_NAIVE_16
44.8
B_CELL_NAIVE_17
44.6
B_CELL_NAIVE_18
44.6
B_CELL_NAIVE_19
44.4
B_CELL_NAIVE_20
44.3
B_CELL_NAIVE_21
44.3
B_CELL_NAIVE_22
44.1
B_CELL_NAIVE_23
44.0
B_CELL_NAIVE_24
43.9
B_CELL_NAIVE_25
43.8
B_CELL_NAIVE_26
43.7
B_CELL_NAIVE_27
43.6
B_CELL_NAIVE_28
43.5
B_CELL_NAIVE_29
43.4
B_CELL_NAIVE_30
43.4
B_CELL_NAIVE_31
43.0
B_CELL_NAIVE_32
43.0
B_CELL_NAIVE_33
42.8
B_CELL_NAIVE_34
42.7
B_CELL_NAIVE_35
42.5
B_CELL_NAIVE_36
42.5
B_CELL_NAIVE_37
42.5
B_CELL_NAIVE_38
42.4
B_CELL_NAIVE_39
42.1
B_CELL_NAIVE_40
42.1
B_CELL_NAIVE_41
42.0
B_CELL_NAIVE_42
41.9
B_CELL_NAIVE_43
41.8
B_CELL_NAIVE_44
41.8
B_CELL_NAIVE_45
41.6
B_CELL_NAIVE_46
41.2
B_CELL_NAIVE_47
41.0
B_CELL_NAIVE_48
40.8
B_CELL_NAIVE_49
40.8
B_CELL_NAIVE_50
40.6
B_CELL_NAIVE_51
40.5
B_CELL_NAIVE_52
40.5
B_CELL_NAIVE_53
40.4
B_CELL_NAIVE_54
40.3
B_CELL_NAIVE_55
40.3
B_CELL_NAIVE_56
40.2
B_CELL_NAIVE_57
40.0
B_CELL_NAIVE_58
40.0
B_CELL_NAIVE_59
39.9
B_CELL_NAIVE_60
39.7
B_CELL_NAIVE_61
39.6
B_CELL_NAIVE_62
39.6
B_CELL_NAIVE_63
39.3
B_CELL_NAIVE_64
39.2
B_CELL_NAIVE_65
39.2
B_CELL_NAIVE_66
39.1
B_CELL_NAIVE_67
39.0
B_CELL_NAIVE_68
38.9
B_CELL_NAIVE_69
38.9
B_CELL_NAIVE_70
38.7
B_CELL_NAIVE_71
38.6
B_CELL_NAIVE_72
38.6
B_CELL_NAIVE_73
38.5
B_CELL_NAIVE_74
38.4
B_CELL_NAIVE_75
38.3
B_CELL_NAIVE_76
38.2
B_CELL_NAIVE_77
38.0
B_CELL_NAIVE_78
37.8
B_CELL_NAIVE_79
37.8
B_CELL_NAIVE_80
37.3
B_CELL_NAIVE_81
37.3
B_CELL_NAIVE_82
37.1
B_CELL_NAIVE_83
37.1
B_CELL_NAIVE_84
37.0
B_CELL_NAIVE_85
36.0
B_CELL_NAIVE_86
35.5
B_CELL_NAIVE_87
35.2
B_CELL_NAIVE_88
34.7
B_CELL_NAIVE_89
34.0
B_CELL_NAIVE_90
32.3
B_CELL_NAIVE_91
19.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
