A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
33.3
nTPM
Schmiedel:
26.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 3.3
Min nTPM: 1.0
P10809_1003
3.3
P10809_1020
2.0
P10809_1039
1.0
P10809_1058
2.7
P10809_1080
2.2
P10809_1107
2.0
Intermediate monocyte nTPM: 2.6
Samples: 6
Max nTPM: 4.6
Min nTPM: 1.1
P10809_1004
4.6
P10809_1023
1.9
P10809_1042
3.0
P10809_1061
3.4
P10809_1081
1.6
P10809_1108
1.1
Non-classical monocyte nTPM: 3.5
Samples: 5
Max nTPM: 7.4
Min nTPM: 1.4
P10809_1005
3.7
P10809_1053
3.5
P10809_1072
7.4
P10809_1082
1.5
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.3
Monaco sample
nTPM
Classical monocyte nTPM: 31.3
Samples: 4
Max nTPM: 46.2
Min nTPM: 19.7
RHH5313_R3680
19.7
RHH5221_R3593
46.2
RHH5250_R3622
34.8
RHH5279_R3651
24.5
Intermediate monocyte nTPM: 29.0
Samples: 4
Max nTPM: 37.0
Min nTPM: 20.1
RHH5314_R3681
20.1
RHH5222_R3594
37.0
RHH5251_R3623
34.5
RHH5280_R3652
24.3
Non-classical monocyte nTPM: 33.3
Samples: 4
Max nTPM: 44.4
Min nTPM: 24.6
RHH5315_R3682
24.6
RHH5223_R3595
44.4
RHH5252_R3624
37.2
RHH5281_R3653
26.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Schmiedel sample id
TPM
Classical monocyte TPM: 20.6
Samples: 91
Max TPM: 24.5
Min TPM: 16.9
MONOCYTES_1
24.5
MONOCYTES_2
23.9
MONOCYTES_3
23.8
MONOCYTES_4
23.7
MONOCYTES_5
23.3
MONOCYTES_6
23.3
MONOCYTES_7
22.6
MONOCYTES_8
22.6
MONOCYTES_9
22.5
MONOCYTES_10
22.4
MONOCYTES_11
22.4
MONOCYTES_12
22.4
MONOCYTES_13
22.2
MONOCYTES_14
22.2
MONOCYTES_15
22.0
MONOCYTES_16
22.0
MONOCYTES_17
22.0
MONOCYTES_18
22.0
MONOCYTES_19
21.9
MONOCYTES_20
21.9
MONOCYTES_21
21.8
MONOCYTES_22
21.8
MONOCYTES_23
21.7
MONOCYTES_24
21.7
MONOCYTES_25
21.6
MONOCYTES_26
21.6
MONOCYTES_27
21.6
MONOCYTES_28
21.6
MONOCYTES_29
21.5
MONOCYTES_30
21.5
MONOCYTES_31
21.4
MONOCYTES_32
21.3
MONOCYTES_33
21.2
MONOCYTES_34
21.1
MONOCYTES_35
21.1
MONOCYTES_36
21.0
MONOCYTES_37
21.0
MONOCYTES_38
21.0
MONOCYTES_39
21.0
MONOCYTES_40
20.9
MONOCYTES_41
20.9
MONOCYTES_42
20.8
MONOCYTES_43
20.8
MONOCYTES_44
20.8
MONOCYTES_45
20.7
MONOCYTES_46
20.5
MONOCYTES_47
20.5
MONOCYTES_48
20.5
MONOCYTES_49
20.5
MONOCYTES_50
20.4
MONOCYTES_51
20.4
MONOCYTES_52
20.3
MONOCYTES_53
20.3
MONOCYTES_54
20.3
MONOCYTES_55
20.3
MONOCYTES_56
20.3
MONOCYTES_57
20.3
MONOCYTES_58
20.1
MONOCYTES_59
20.1
MONOCYTES_60
20.0
MONOCYTES_61
19.9
MONOCYTES_62
19.9
MONOCYTES_63
19.8
MONOCYTES_64
19.7
MONOCYTES_65
19.7
MONOCYTES_66
19.5
MONOCYTES_67
19.5
MONOCYTES_68
19.4
MONOCYTES_69
19.4
MONOCYTES_70
19.3
MONOCYTES_71
19.3
MONOCYTES_72
19.3
MONOCYTES_73
19.3
MONOCYTES_74
19.2
MONOCYTES_75
19.0
MONOCYTES_76
19.0
MONOCYTES_77
18.9
MONOCYTES_78
18.9
MONOCYTES_79
18.8
MONOCYTES_80
18.8
MONOCYTES_81
18.8
MONOCYTES_82
18.7
MONOCYTES_83
18.6
MONOCYTES_84
18.6
MONOCYTES_85
18.6
MONOCYTES_86
18.3
MONOCYTES_87
18.3
MONOCYTES_88
18.2
MONOCYTES_89
18.0
MONOCYTES_90
17.8
MONOCYTES_91
16.9
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Non-classical monocyte TPM: 26.2
Samples: 90
Max TPM: 32.8
Min TPM: 18.7
M2_1
32.8
M2_2
31.7
M2_3
31.0
M2_4
30.9
M2_5
30.8
M2_6
30.7
M2_7
30.3
M2_8
30.3
M2_9
30.2
M2_10
30.2
M2_11
30.1
M2_12
30.1
M2_13
29.9
M2_14
29.7
M2_15
29.5
M2_16
29.2
M2_17
28.8
M2_18
28.8
M2_19
28.7
M2_20
28.7
M2_21
28.7
M2_22
28.6
M2_23
28.3
M2_24
28.3
M2_25
28.2
M2_26
27.9
M2_27
27.9
M2_28
27.8
M2_29
27.7
M2_30
27.7
M2_31
27.5
M2_32
27.4
M2_33
27.2
M2_34
27.1
M2_35
26.9
M2_36
26.9
M2_37
26.8
M2_38
26.8
M2_39
26.8
M2_40
26.7
M2_41
26.6
M2_42
26.5
M2_43
26.4
M2_44
26.4
M2_45
26.3
M2_46
26.2
M2_47
26.1
M2_48
25.9
M2_49
25.9
M2_50
25.9
M2_51
25.8
M2_52
25.8
M2_53
25.7
M2_54
25.7
M2_55
25.5
M2_56
25.5
M2_57
25.5
M2_58
25.2
M2_59
25.2
M2_60
25.1
M2_61
25.0
M2_62
25.0
M2_63
25.0
M2_64
24.6
M2_65
24.5
M2_66
24.4
M2_67
24.4
M2_68
24.3
M2_69
24.3
M2_70
24.2
M2_71
24.1
M2_72
24.0
M2_73
24.0
M2_74
23.8
M2_75
23.8
M2_76
23.6
M2_77
23.5
M2_78
22.9
M2_79
22.7
M2_80
22.7
M2_81
22.7
M2_82
22.2
M2_83
22.2
M2_84
21.7
M2_85
21.0
M2_86
20.9
M2_87
20.4
M2_88
20.0
M2_89
19.7
M2_90
18.7
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