A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
50.7
nTPM
Schmiedel:
45.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
NK-cell nTPM: 3.0
Samples: 6
Max nTPM: 5.8
Min nTPM: 0.8
P10809_1013
3.4
P10809_1033
0.9
P10809_1052
5.8
P10809_1071
5.0
P10809_1093
0.8
P10809_1103
2.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.7
Monaco sample
nTPM
NK-cell nTPM: 50.7
Samples: 4
Max nTPM: 58.9
Min nTPM: 40.1
RHH5316_R3683
40.1
RHH5224_R3596
55.7
RHH5253_R3625
58.9
RHH5282_R3654
48.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
Schmiedel sample id
TPM
NK-cell TPM: 45.5
Samples: 90
Max TPM: 55.2
Min TPM: 23.6
NK_1
55.2
NK_2
55.2
NK_3
53.8
NK_4
53.5
NK_5
53.0
NK_6
52.2
NK_7
51.4
NK_8
51.3
NK_9
51.2
NK_10
51.0
NK_11
51.0
NK_12
50.8
NK_13
50.7
NK_14
50.2
NK_15
50.1
NK_16
49.7
NK_17
49.7
NK_18
49.6
NK_19
49.5
NK_20
49.2
NK_21
48.8
NK_22
48.7
NK_23
48.6
NK_24
48.5
NK_25
48.2
NK_26
48.0
NK_27
48.0
NK_28
48.0
NK_29
47.8
NK_30
47.7
NK_31
47.6
NK_32
47.4
NK_33
47.4
NK_34
46.9
NK_35
46.8
NK_36
46.6
NK_37
46.6
NK_38
46.4
NK_39
46.3
NK_40
46.2
NK_41
46.1
NK_42
46.0
NK_43
46.0
NK_44
46.0
NK_45
45.8
NK_46
45.6
NK_47
45.5
NK_48
45.4
NK_49
45.3
NK_50
45.0
NK_51
44.9
NK_52
44.8
NK_53
44.6
NK_54
44.4
NK_55
44.3
NK_56
43.8
NK_57
43.8
NK_58
43.7
NK_59
43.7
NK_60
43.5
NK_61
43.3
NK_62
43.3
NK_63
43.2
NK_64
43.1
NK_65
43.1
NK_66
43.1
NK_67
43.0
NK_68
42.9
NK_69
42.4
NK_70
42.3
NK_71
42.3
NK_72
42.1
NK_73
42.1
NK_74
41.9
NK_75
41.9
NK_76
41.7
NK_77
41.4
NK_78
41.3
NK_79
40.7
NK_80
40.6
NK_81
40.0
NK_82
39.7
NK_83
39.3
NK_84
39.3
NK_85
39.0
NK_86
38.6
NK_87
38.6
NK_88
37.6
NK_89
32.6
NK_90
23.6
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