A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
25.3
nTPM
Schmiedel:
117.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Memory B-cell nTPM: 3.8
Samples: 6
Max nTPM: 6.8
Min nTPM: 2.1
P10809_1017
2.9
P10809_1025
2.1
P10809_1044
6.8
P10809_1063
3.9
P10809_1092
5.1
P10809_1105
2.1
Naive B-cell nTPM: 4.7
Samples: 6
Max nTPM: 9.4
Min nTPM: 2.0
P10809_1011
2.0
P10809_1029
8.3
P10809_1048
2.2
P10809_1067
2.2
P10809_1091
9.4
P10809_1104
3.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.2
Samples: 4
Max nTPM: 31.6
Min nTPM: 13.7
RHH5310_R3677
13.7
RHH5218_R3590
31.6
RHH5247_R3619
19.8
RHH5276_R3648
15.8
Naive B-cell nTPM: 20.7
Samples: 4
Max nTPM: 30.8
Min nTPM: 12.1
RHH5308_R3675
20.0
RHH5216_R3588
12.1
RHH5245_R3617
30.8
RHH5274_R3646
19.8
Non-switched memory B-cell nTPM: 22.5
Samples: 4
Max nTPM: 33.2
Min nTPM: 15.8
RHH5309_R3676
18.2
RHH5217_R3589
33.2
RHH5246_R3618
22.7
RHH5275_R3647
15.8
Plasmablast nTPM: 11.9
Samples: 4
Max nTPM: 14.1
Min nTPM: 9.6
RHH5312_R3679
14.1
RHH5220_R3592
11.7
RHH5249_R3621
9.6
RHH5278_R3650
12.1
Switched memory B-cell nTPM: 25.3
Samples: 4
Max nTPM: 30.5
Min nTPM: 21.7
RHH5311_R3678
24.2
RHH5219_R3591
24.7
RHH5248_R3620
30.5
RHH5277_R3649
21.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.5
Schmiedel sample id
TPM
Naive B-cell TPM: 117.5
Samples: 91
Max TPM: 208.9
Min TPM: 75.7
B_CELL_NAIVE_1
208.9
B_CELL_NAIVE_2
196.3
B_CELL_NAIVE_3
190.6
B_CELL_NAIVE_4
178.3
B_CELL_NAIVE_5
169.5
B_CELL_NAIVE_6
161.8
B_CELL_NAIVE_7
161.5
B_CELL_NAIVE_8
159.3
B_CELL_NAIVE_9
159.2
B_CELL_NAIVE_10
158.7
B_CELL_NAIVE_11
149.4
B_CELL_NAIVE_12
147.1
B_CELL_NAIVE_13
143.7
B_CELL_NAIVE_14
137.3
B_CELL_NAIVE_15
134.4
B_CELL_NAIVE_16
134.2
B_CELL_NAIVE_17
133.9
B_CELL_NAIVE_18
132.2
B_CELL_NAIVE_19
129.3
B_CELL_NAIVE_20
128.9
B_CELL_NAIVE_21
128.5
B_CELL_NAIVE_22
128.5
B_CELL_NAIVE_23
126.6
B_CELL_NAIVE_24
126.0
B_CELL_NAIVE_25
125.5
B_CELL_NAIVE_26
123.7
B_CELL_NAIVE_27
122.9
B_CELL_NAIVE_28
122.9
B_CELL_NAIVE_29
122.8
B_CELL_NAIVE_30
121.4
B_CELL_NAIVE_31
121.2
B_CELL_NAIVE_32
120.5
B_CELL_NAIVE_33
120.3
B_CELL_NAIVE_34
120.0
B_CELL_NAIVE_35
120.0
B_CELL_NAIVE_36
120.0
B_CELL_NAIVE_37
119.7
B_CELL_NAIVE_38
118.7
B_CELL_NAIVE_39
118.3
B_CELL_NAIVE_40
117.6
B_CELL_NAIVE_41
116.7
B_CELL_NAIVE_42
116.0
B_CELL_NAIVE_43
115.9
B_CELL_NAIVE_44
114.1
B_CELL_NAIVE_45
113.6
B_CELL_NAIVE_46
113.3
B_CELL_NAIVE_47
113.2
B_CELL_NAIVE_48
113.0
B_CELL_NAIVE_49
111.8
B_CELL_NAIVE_50
111.8
B_CELL_NAIVE_51
111.0
B_CELL_NAIVE_52
111.0
B_CELL_NAIVE_53
110.6
B_CELL_NAIVE_54
110.4
B_CELL_NAIVE_55
108.9
B_CELL_NAIVE_56
108.8
B_CELL_NAIVE_57
108.2
B_CELL_NAIVE_58
107.8
B_CELL_NAIVE_59
107.5
B_CELL_NAIVE_60
107.1
B_CELL_NAIVE_61
107.0
B_CELL_NAIVE_62
106.8
B_CELL_NAIVE_63
106.3
B_CELL_NAIVE_64
104.8
B_CELL_NAIVE_65
104.2
B_CELL_NAIVE_66
104.0
B_CELL_NAIVE_67
103.8
B_CELL_NAIVE_68
102.3
B_CELL_NAIVE_69
99.9
B_CELL_NAIVE_70
99.7
B_CELL_NAIVE_71
98.2
B_CELL_NAIVE_72
97.5
B_CELL_NAIVE_73
97.2
B_CELL_NAIVE_74
96.4
B_CELL_NAIVE_75
96.2
B_CELL_NAIVE_76
95.9
B_CELL_NAIVE_77
93.2
B_CELL_NAIVE_78
91.4
B_CELL_NAIVE_79
91.2
B_CELL_NAIVE_80
90.7
B_CELL_NAIVE_81
89.7
B_CELL_NAIVE_82
87.9
B_CELL_NAIVE_83
87.2
B_CELL_NAIVE_84
86.7
B_CELL_NAIVE_85
84.8
B_CELL_NAIVE_86
83.6
B_CELL_NAIVE_87
83.1
B_CELL_NAIVE_88
81.8
B_CELL_NAIVE_89
81.3
B_CELL_NAIVE_90
76.3
B_CELL_NAIVE_91
75.7
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The Human Protein Atlas project is funded
