A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.8
nTPM
Monaco:
26.3
nTPM
Schmiedel:
82.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.8
HPA sample
nTPM
NK-cell nTPM: 3.8
Samples: 6
Max nTPM: 8.7
Min nTPM: 0.7
P10809_1013
3.9
P10809_1033
1.4
P10809_1052
8.7
P10809_1071
2.4
P10809_1093
0.7
P10809_1103
5.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
Monaco sample
nTPM
NK-cell nTPM: 26.3
Samples: 4
Max nTPM: 30.7
Min nTPM: 19.3
RHH5316_R3683
19.3
RHH5224_R3596
26.6
RHH5253_R3625
28.7
RHH5282_R3654
30.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.4
Schmiedel sample id
TPM
NK-cell TPM: 82.4
Samples: 90
Max TPM: 156.7
Min TPM: 33.7
NK_1
156.7
NK_2
152.4
NK_3
151.3
NK_4
144.0
NK_5
137.6
NK_6
123.4
NK_7
119.6
NK_8
119.5
NK_9
116.9
NK_10
116.3
NK_11
112.0
NK_12
108.1
NK_13
104.3
NK_14
103.5
NK_15
102.5
NK_16
101.8
NK_17
99.6
NK_18
99.4
NK_19
97.5
NK_20
95.6
NK_21
95.5
NK_22
95.5
NK_23
95.3
NK_24
95.3
NK_25
93.6
NK_26
93.2
NK_27
93.0
NK_28
92.2
NK_29
91.1
NK_30
90.4
NK_31
90.0
NK_32
89.8
NK_33
88.3
NK_34
88.1
NK_35
85.5
NK_36
84.8
NK_37
82.9
NK_38
81.8
NK_39
81.4
NK_40
81.1
NK_41
80.7
NK_42
80.5
NK_43
80.3
NK_44
79.6
NK_45
79.5
NK_46
79.2
NK_47
79.1
NK_48
78.5
NK_49
77.5
NK_50
77.0
NK_51
77.0
NK_52
75.5
NK_53
75.4
NK_54
75.3
NK_55
73.0
NK_56
71.8
NK_57
71.7
NK_58
70.7
NK_59
70.7
NK_60
69.4
NK_61
67.9
NK_62
66.6
NK_63
65.5
NK_64
65.0
NK_65
64.9
NK_66
63.8
NK_67
63.8
NK_68
63.7
NK_69
61.3
NK_70
61.3
NK_71
61.2
NK_72
61.1
NK_73
60.0
NK_74
59.9
NK_75
59.3
NK_76
59.0
NK_77
58.6
NK_78
58.6
NK_79
58.1
NK_80
57.7
NK_81
56.9
NK_82
56.7
NK_83
55.5
NK_84
52.5
NK_85
51.4
NK_86
51.2
NK_87
51.0
NK_88
50.2
NK_89
49.6
NK_90
33.7
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