A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
16.6
nTPM
Schmiedel:
51.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.4
P10809_1003
1.1
P10809_1020
2.1
P10809_1039
2.0
P10809_1058
0.4
P10809_1080
1.6
P10809_1107
1.5
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 3.0
Min nTPM: 0.4
P10809_1004
0.6
P10809_1023
0.4
P10809_1042
1.5
P10809_1061
3.0
P10809_1081
1.3
P10809_1108
1.6
Non-classical monocyte nTPM: 3.5
Samples: 5
Max nTPM: 8.7
Min nTPM: 0.1
P10809_1005
0.6
P10809_1053
2.5
P10809_1072
8.7
P10809_1082
5.6
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.6
Monaco sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 17.1
Min nTPM: 10.6
RHH5313_R3680
14.5
RHH5221_R3593
17.1
RHH5250_R3622
10.6
RHH5279_R3651
12.2
Intermediate monocyte nTPM: 16.4
Samples: 4
Max nTPM: 22.7
Min nTPM: 11.1
RHH5314_R3681
11.1
RHH5222_R3594
14.0
RHH5251_R3623
17.9
RHH5280_R3652
22.7
Non-classical monocyte nTPM: 16.6
Samples: 4
Max nTPM: 22.1
Min nTPM: 10.2
RHH5315_R3682
10.2
RHH5223_R3595
22.1
RHH5252_R3624
13.2
RHH5281_R3653
21.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.4
Schmiedel sample id
TPM
Classical monocyte TPM: 34.3
Samples: 91
Max TPM: 46.8
Min TPM: 25.0
MONOCYTES_1
46.8
MONOCYTES_2
46.8
MONOCYTES_3
44.6
MONOCYTES_4
44.6
MONOCYTES_5
43.9
MONOCYTES_6
43.4
MONOCYTES_7
42.9
MONOCYTES_8
42.2
MONOCYTES_9
41.1
MONOCYTES_10
41.1
MONOCYTES_11
41.1
MONOCYTES_12
39.7
MONOCYTES_13
39.4
MONOCYTES_14
39.3
MONOCYTES_15
39.0
MONOCYTES_16
38.4
MONOCYTES_17
38.4
MONOCYTES_18
38.3
MONOCYTES_19
38.2
MONOCYTES_20
37.8
MONOCYTES_21
37.8
MONOCYTES_22
37.8
MONOCYTES_23
37.7
MONOCYTES_24
37.2
MONOCYTES_25
37.1
MONOCYTES_26
37.1
MONOCYTES_27
36.9
MONOCYTES_28
36.7
MONOCYTES_29
36.5
MONOCYTES_30
36.2
MONOCYTES_31
36.1
MONOCYTES_32
36.1
MONOCYTES_33
35.6
MONOCYTES_34
35.6
MONOCYTES_35
35.5
MONOCYTES_36
35.0
MONOCYTES_37
35.0
MONOCYTES_38
34.8
MONOCYTES_39
34.7
MONOCYTES_40
34.6
MONOCYTES_41
34.5
MONOCYTES_42
34.5
MONOCYTES_43
34.3
MONOCYTES_44
34.2
MONOCYTES_45
33.9
MONOCYTES_46
33.8
MONOCYTES_47
33.8
MONOCYTES_48
33.7
MONOCYTES_49
33.6
MONOCYTES_50
33.5
MONOCYTES_51
33.3
MONOCYTES_52
33.1
MONOCYTES_53
32.7
MONOCYTES_54
32.5
MONOCYTES_55
32.5
MONOCYTES_56
32.4
MONOCYTES_57
32.3
MONOCYTES_58
32.0
MONOCYTES_59
32.0
MONOCYTES_60
31.9
MONOCYTES_61
31.8
MONOCYTES_62
31.5
MONOCYTES_63
31.5
MONOCYTES_64
31.4
MONOCYTES_65
31.4
MONOCYTES_66
31.2
MONOCYTES_67
31.0
MONOCYTES_68
31.0
MONOCYTES_69
30.8
MONOCYTES_70
30.5
MONOCYTES_71
30.4
MONOCYTES_72
30.1
MONOCYTES_73
30.0
MONOCYTES_74
30.0
MONOCYTES_75
30.0
MONOCYTES_76
29.7
MONOCYTES_77
29.5
MONOCYTES_78
29.0
MONOCYTES_79
28.7
MONOCYTES_80
28.7
MONOCYTES_81
28.4
MONOCYTES_82
28.2
MONOCYTES_83
28.1
MONOCYTES_84
27.9
MONOCYTES_85
27.8
MONOCYTES_86
27.5
MONOCYTES_87
27.1
MONOCYTES_88
26.4
MONOCYTES_89
25.6
MONOCYTES_90
25.1
MONOCYTES_91
25.0
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Non-classical monocyte TPM: 51.4
Samples: 90
Max TPM: 86.1
Min TPM: 27.9
M2_1
86.1
M2_2
78.7
M2_3
77.9
M2_4
69.1
M2_5
68.9
M2_6
68.6
M2_7
67.7
M2_8
67.2
M2_9
66.8
M2_10
66.4
M2_11
66.0
M2_12
65.1
M2_13
64.5
M2_14
64.5
M2_15
64.1
M2_16
63.8
M2_17
62.9
M2_18
62.9
M2_19
62.1
M2_20
61.1
M2_21
60.8
M2_22
60.8
M2_23
60.2
M2_24
60.1
M2_25
59.8
M2_26
59.7
M2_27
58.0
M2_28
57.7
M2_29
56.1
M2_30
56.0
M2_31
55.8
M2_32
55.5
M2_33
54.8
M2_34
54.2
M2_35
54.2
M2_36
54.0
M2_37
53.8
M2_38
53.3
M2_39
53.1
M2_40
52.5
M2_41
52.2
M2_42
51.4
M2_43
50.9
M2_44
50.8
M2_45
50.4
M2_46
50.1
M2_47
49.9
M2_48
49.6
M2_49
49.3
M2_50
49.1
M2_51
48.7
M2_52
48.6
M2_53
48.2
M2_54
48.1
M2_55
48.0
M2_56
47.8
M2_57
46.6
M2_58
46.0
M2_59
45.6
M2_60
44.7
M2_61
44.6
M2_62
44.3
M2_63
44.3
M2_64
43.6
M2_65
43.3
M2_66
43.0
M2_67
42.8
M2_68
42.6
M2_69
42.3
M2_70
42.0
M2_71
41.8
M2_72
41.5
M2_73
41.4
M2_74
39.8
M2_75
39.3
M2_76
38.8
M2_77
38.3
M2_78
38.3
M2_79
37.4
M2_80
37.3
M2_81
36.8
M2_82
36.6
M2_83
36.4
M2_84
36.0
M2_85
34.8
M2_86
34.7
M2_87
34.5
M2_88
33.7
M2_89
29.1
M2_90
27.9
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