On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
887.9
nTPM
HPA Brain:
364.8
nTPM
GTEx:
887.9
nTPM
FANTOM5:
33.4
Scaled Tags Per Million
Macaque:
12.8
nTPM
Mouse:
689.8
nTPM
Pig:
703.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
364.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 340.8
2411
Female, age 72, unknown
379.8
2666
Male, age 74, left hemisphere
371.5
2586
Male, age 75, left hemisphere
366.0
1870
Female, age 42, unknown
352.9
2828
Female, age 72, unknown
333.1
2219
Male, age 76, both hemispheres
332.2
1833
Male, age 53, unknown
331.6
1827
Male, age 72, unknown
323.4
1830
Male, age 51, unknown
313.8
2019
Male, age 18, unknown
303.3
Dorsal raphe nucleus nTPM: 337.2
2016
Female, age 72, unknown
371.3
2298
Female, age 72, unknown
357.1
1828
Male, age 53, unknown
325.7
2750
Male, age 76, both hemispheres
321.5
2047
Male, age 72, unknown
310.2
Inferior colliculus nTPM: 315.4
1890
Male, age 53, unknown
332.6
2849
Male, age 72, unknown
313.2
2097
Female, age 72, unknown
310.6
1848
Female, age 42, unknown
305.0
Median raphe nucleus nTPM: 313.6
2220
Male, age 76, midline
313.6
Periaquaductal grey, anterior nTPM: 336.2
2502
Female, age 75, unknown
384.7
1795
Male, age 51, unknown
317.3
1947
Male, age 18, unknown
306.4
Periaquaductal grey, dorsal nTPM: 328.9
1840
Male, age 53, unknown
352.5
1831
Male, age 72, unknown
331.2
2464
Female, age 72, unknown
321.9
2850
Male, age 76, both hemispheres
309.8
Periaquaductal grey, lateral nTPM: 311.2
2053
Male, age 18, unknown
371.4
2140
Male, age 76, both hemispheres
292.9
2272
Male, age 74, both hemispheres
269.3
Pretectal area nTPM: 301.9
1815
Male, age 53, unknown
333.7
2224
Female, age 72, unknown
331.3
2825
Male, age 18, unknown
324.2
1817
Female, age 42, unknown
319.5
2316
Male, age 76, right hemisphere
317.6
2407
Male, age 75, both hemispheres
295.0
2007
Male, age 72, unknown
292.2
1944
Female, age 72, unknown
284.5
2273
Male, age 74, both hemispheres
282.2
1816
Male, age 51, unknown
273.7
2667
Female, age 75, unknown
267.3
Red nucleus nTPM: 355.7
2503
Female, age 72, unknown
419.3
1865
Male, age 51, unknown
410.2
1821
Female, age 72, unknown
394.9
1904
Male, age 53, unknown
377.8
2769
Male, age 72, unknown
366.5
2227
Male, age 72, unknown
362.0
2725
Female, age 75, unknown
357.0
2584
Male, age 75, left hemisphere
338.6
2588
Male, age 74, left hemisphere
338.5
1954
Female, age 42, unknown
330.4
2785
Male, age 18, unknown
292.6
2823
Male, age 76, right hemisphere
279.9
Substantia nigra nTPM: 364.8
2699
Male, age 18, unknown
459.4
2665
Male, age 74, both hemispheres
432.4
1851
Male, age 51, unknown
430.3
1916
Female, age 42, unknown
368.1
2409
Female, age 72, unknown
361.2
2241
Male, age 72, unknown
340.5
2590
Female, age 75, unknown
337.3
1889
Female, age 72, unknown
327.7
2583
Male, age 75, right hemisphere
296.9
1941
Male, age 53, unknown
294.4
Superior colliculus nTPM: 337.1
2587
Male, age 74, left hemisphere
405.0
1913
Female, age 42, unknown
395.5
1995
Male, age 72, unknown
390.4
2668
Female, age 75, unknown
346.2
1839
Male, age 51, unknown
332.1
1796
Male, age 53, unknown
330.2
2664
Male, age 75, both hemispheres
315.1
2261
Male, age 18, unknown
298.8
1895
Male, age 76, right hemisphere
283.1
2087
Female, age 72, unknown
274.7
Ventral tegmental area nTPM: 361.7
1915
Female, age 42, unknown
408.1
2410
Female, age 72, unknown
394.8
2223
Female, age 72, unknown
380.6
2021
Male, age 53, unknown
352.0
1942
Male, age 51, unknown
328.3
2218
Male, age 76, both hemispheres
306.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
887.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 887.9
Samples: 183
Max nTPM: 2357.1
Min nTPM: 351.7
Std nTPM: 322.0
Median nTPM: 807.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2357.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1819.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1687.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1600.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1596.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1585.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1561.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1556.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1545.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1541.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1524.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1499.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1481.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1441.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1399.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1389.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1375.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1326.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1308.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1285.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1283.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1282.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1276.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1274.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1255.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1244.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1240.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1205.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1200.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1196.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1183.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1182.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1177.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1176.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1159.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1158.2
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1144.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1137.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1134.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1132.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1122.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1114.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1107.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1103.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1086.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1080.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1067.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1066.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1065.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1053.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1039.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1035.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1030.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1013.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1007.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1000.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
999.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
998.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
984.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
975.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
967.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
965.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
964.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
963.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
957.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
951.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
942.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
930.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
930.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
928.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
927.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
923.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
916.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
903.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
895.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
891.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
889.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
883.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
880.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
870.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
869.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
865.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
861.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
843.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
838.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
831.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
830.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
827.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
823.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
814.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
810.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
807.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
798.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
797.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
784.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
783.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
781.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
779.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
773.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
771.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
768.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
765.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
764.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
760.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
757.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
755.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
753.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
749.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
749.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
747.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
745.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
745.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
740.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
736.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
736.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
733.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
732.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
730.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
724.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
722.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
719.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
716.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
706.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
706.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
702.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
681.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
681.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
679.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
676.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
673.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
670.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
670.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
666.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
665.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
664.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
650.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
649.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
645.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
639.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
636.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
635.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
633.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
631.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
628.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
626.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
622.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
613.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
611.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
610.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
610.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
609.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
606.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
603.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
591.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
575.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
572.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
566.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
566.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
557.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
556.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
555.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
553.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
550.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
549.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
547.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
546.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
544.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
535.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
535.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
516.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
510.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
504.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
501.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
498.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
490.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
486.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
478.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
474.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
418.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
416.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
415.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
408.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
351.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 12.1
Samples: 1
Max nTPM: 12.1
Min nTPM: 12.1
Sample A
12.1
Midbrain nTPM: 12.8
Samples: 1
Max nTPM: 12.8
Min nTPM: 12.8
Sample A
12.8
Superior colliculi nTPM: 11.0
Samples: 1
Max nTPM: 11.0
Min nTPM: 11.0
Sample A
11.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
703.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 703.8
Samples: 3
Max nTPM: 823.2
Min nTPM: 592.8
Sample A
Female
823.2
Sample B
Female
695.5
Sample C
Male
592.8
Midbrain nTPM: 580.3
Samples: 3
Max nTPM: 669.6
Min nTPM: 497.3
Sample B
Female
669.6
Sample C
Male
574.0
Sample D
Male
497.3
Periaqueductal gray nTPM: 522.7
Samples: 3
Max nTPM: 581.0
Min nTPM: 482.2
Sample B
Female
504.9
Sample C
Male
581.0
Sample D
Male
482.2
Superior colliculi nTPM: 693.0
Samples: 4
Max nTPM: 823.9
Min nTPM: 602.4
Sample A
Female
823.9
Sample B
Female
709.1
Sample C
Male
636.7
Sample D
Male
602.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
689.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 689.8
Samples: 4
Max nTPM: 894.0
Min nTPM: 565.2
Sample A
708.9
Sample B
894.0
Sample C
565.2
Sample D
591.2
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The Human Protein Atlas project is funded
