MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:887.9 nTPM
HPA Brain:363.7 nTPM
GTEx:887.9 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:689.3 nTPM
Mouse:937.8 nTPM
Allen mouse:10.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 363.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 339.7
2411 Female, age 72, unknown 378.6
2666 Male, age 74, left hemisphere 370.1
2586 Male, age 75, left hemisphere 365.0
1870 Female, age 42, unknown 351.9
2828 Female, age 72, unknown 332.0
2219 Male, age 76, both hemispheres 331.7
1833 Male, age 53, unknown 330.6
1827 Male, age 72, unknown 322.4
1830 Male, age 51, unknown 312.9
2019 Male, age 18, unknown 302.4
Dorsal raphe nucleus
nTPM: 336.1
2016 Female, age 72, unknown 369.8
2298 Female, age 72, unknown 355.8
1828 Male, age 53, unknown 324.6
2750 Male, age 76, both hemispheres 320.9
2047 Male, age 72, unknown 309.4
Inferior colliculus
nTPM: 314.3
1890 Male, age 53, unknown 331.6
2849 Male, age 72, unknown 312.1
2097 Female, age 72, unknown 309.5
1848 Female, age 42, unknown 304.0
Median raphe nucleus
nTPM: 313.1
2220 Male, age 76, midline 313.1
Periaquaductal grey, anterior
nTPM: 335.1
2502 Female, age 75, unknown 383.5
1795 Male, age 51, unknown 316.3
1947 Male, age 18, unknown 305.5
Periaquaductal grey, dorsal
nTPM: 327.9
1840 Male, age 53, unknown 351.5
1831 Male, age 72, unknown 330.1
2464 Female, age 72, unknown 320.9
2850 Male, age 76, both hemispheres 309.1
Periaquaductal grey, lateral
nTPM: 310.3
2053 Male, age 18, unknown 370.2
2140 Male, age 76, both hemispheres 292.3
2272 Male, age 74, both hemispheres 268.2
Pretectal area
nTPM: 301.0
1815 Male, age 53, unknown 332.8
2224 Female, age 72, unknown 330.1
2825 Male, age 18, unknown 323.2
1817 Female, age 42, unknown 318.5
2316 Male, age 76, right hemisphere 317.0
2407 Male, age 75, both hemispheres 294.1
2007 Male, age 72, unknown 291.2
1944 Female, age 72, unknown 283.7
2273 Male, age 74, both hemispheres 281.1
1816 Male, age 51, unknown 273.0
2667 Female, age 75, unknown 266.6
Red nucleus
nTPM: 354.5
2503 Female, age 72, unknown 418.1
1865 Male, age 51, unknown 408.9
1821 Female, age 72, unknown 393.7
1904 Male, age 53, unknown 376.4
2769 Male, age 72, unknown 365.3
2227 Male, age 72, unknown 361.0
2725 Female, age 75, unknown 355.8
2584 Male, age 75, left hemisphere 337.6
2588 Male, age 74, left hemisphere 337.5
1954 Female, age 42, unknown 329.3
2785 Male, age 18, unknown 291.6
2823 Male, age 76, right hemisphere 279.4
Substantia nigra
nTPM: 363.7
2699 Male, age 18, unknown 457.9
2665 Male, age 74, both hemispheres 430.7
1851 Male, age 51, unknown 428.9
1916 Female, age 42, unknown 366.6
2409 Female, age 72, unknown 360.2
2241 Male, age 72, unknown 339.6
2590 Female, age 75, unknown 336.4
1889 Female, age 72, unknown 326.5
2583 Male, age 75, right hemisphere 296.2
1941 Male, age 53, unknown 293.6
Superior colliculus
nTPM: 336.0
2587 Male, age 74, left hemisphere 403.4
1913 Female, age 42, unknown 394.0
1995 Male, age 72, unknown 389.1
2668 Female, age 75, unknown 345.1
1839 Male, age 51, unknown 331.0
1796 Male, age 53, unknown 329.2
2664 Male, age 75, both hemispheres 314.0
2261 Male, age 18, unknown 297.9
1895 Male, age 76, right hemisphere 282.6
2087 Female, age 72, unknown 273.8
Ventral tegmental area
nTPM: 360.6
1915 Female, age 42, unknown 406.7
2410 Female, age 72, unknown 393.4
2223 Female, age 72, unknown 379.3
2021 Male, age 53, unknown 351.0
1942 Male, age 51, unknown 327.2
2218 Male, age 76, both hemispheres 306.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 887.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 887.9
Samples: 183

Max nTPM: 2357.1
Min nTPM: 351.7
Std nTPM: 322.0
Median nTPM: 807.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2357.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1819.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1687.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1600.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1596.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1585.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1561.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1556.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1545.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1541.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1524.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 689.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 671.9
Samples: 4

Max nTPM: 818.5
Min nTPM: 585.2
Sample A Female 818.5
Sample B Female 693.3
Sample C Male 590.7
Sample D Male 585.2
Midbrain
nTPM: 648.6
Samples: 4

Max nTPM: 858.4
Min nTPM: 496.6
Sample A Female 858.4
Sample B Female 666.9
Sample C Male 572.3
Sample D Male 496.6
Periaqueductal gray
nTPM: 521.2
Samples: 3

Max nTPM: 578.8
Min nTPM: 481.3
Sample B Female 503.6
Sample C Male 578.8
Sample D Male 481.3
Superior colliculi
nTPM: 689.3
Samples: 4

Max nTPM: 818.3
Min nTPM: 599.5
Sample A Female 818.3
Sample B Female 705.8
Sample C Male 633.7
Sample D Male 599.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 937.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 937.8
Samples: 4

Max nTPM: 1033.2
Min nTPM: 858.2
Sample A Male 1033.2
Sample B Male 879.6
Sample C Female 858.2
Sample D Female 980.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
69012777 Antisense, RP_050309_01_E01, Mouse strain C57BL/6J (56 days, male) 10.1

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