A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14585.6
nTPM
Monaco:
1350.0
nTPM
Schmiedel:
491.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14585.6
HPA sample
nTPM
Memory B-cell nTPM: 14585.7
Samples: 6
Max nTPM: 29251.4
Min nTPM: 6734.3
P10809_1017
6734.3
P10809_1025
14633.4
P10809_1044
29251.4
P10809_1063
13138.0
P10809_1092
11650.5
P10809_1105
12106.3
Naive B-cell nTPM: 12533.8
Samples: 6
Max nTPM: 28182.4
Min nTPM: 6793.7
P10809_1011
6793.7
P10809_1029
10840.1
P10809_1048
28182.4
P10809_1067
10274.6
P10809_1091
9698.8
P10809_1104
9413.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1350.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1350.0
Samples: 4
Max nTPM: 3104.2
Min nTPM: 267.6
RHH5310_R3677
831.6
RHH5218_R3590
267.6
RHH5247_R3619
3104.2
RHH5276_R3648
1196.6
Naive B-cell nTPM: 768.9
Samples: 4
Max nTPM: 1336.5
Min nTPM: 394.5
RHH5308_R3675
686.5
RHH5216_R3588
394.5
RHH5245_R3617
1336.5
RHH5274_R3646
658.1
Non-switched memory B-cell nTPM: 769.1
Samples: 4
Max nTPM: 1228.1
Min nTPM: 312.7
RHH5309_R3676
861.8
RHH5217_R3589
312.7
RHH5246_R3618
673.6
RHH5275_R3647
1228.1
Plasmablast nTPM: 660.8
Samples: 4
Max nTPM: 818.9
Min nTPM: 351.4
RHH5312_R3679
712.3
RHH5220_R3592
351.4
RHH5249_R3621
818.9
RHH5278_R3650
760.4
Switched memory B-cell nTPM: 757.8
Samples: 4
Max nTPM: 1022.4
Min nTPM: 450.0
RHH5311_R3678
1022.4
RHH5219_R3591
571.2
RHH5248_R3620
450.0
RHH5277_R3649
987.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
491.7
Schmiedel sample id
TPM
Naive B-cell TPM: 491.7
Samples: 91
Max TPM: 726.5
Min TPM: 189.9
B_CELL_NAIVE_1
726.5
B_CELL_NAIVE_2
694.2
B_CELL_NAIVE_3
647.5
B_CELL_NAIVE_4
643.6
B_CELL_NAIVE_5
626.0
B_CELL_NAIVE_6
620.0
B_CELL_NAIVE_7
613.9
B_CELL_NAIVE_8
613.2
B_CELL_NAIVE_9
611.5
B_CELL_NAIVE_10
606.5
B_CELL_NAIVE_11
604.5
B_CELL_NAIVE_12
599.4
B_CELL_NAIVE_13
589.7
B_CELL_NAIVE_14
587.3
B_CELL_NAIVE_15
585.6
B_CELL_NAIVE_16
585.4
B_CELL_NAIVE_17
582.5
B_CELL_NAIVE_18
581.0
B_CELL_NAIVE_19
579.3
B_CELL_NAIVE_20
575.8
B_CELL_NAIVE_21
575.8
B_CELL_NAIVE_22
571.4
B_CELL_NAIVE_23
568.6
B_CELL_NAIVE_24
567.4
B_CELL_NAIVE_25
567.4
B_CELL_NAIVE_26
564.9
B_CELL_NAIVE_27
564.1
B_CELL_NAIVE_28
558.5
B_CELL_NAIVE_29
554.6
B_CELL_NAIVE_30
550.4
B_CELL_NAIVE_31
546.3
B_CELL_NAIVE_32
540.1
B_CELL_NAIVE_33
536.7
B_CELL_NAIVE_34
535.9
B_CELL_NAIVE_35
534.9
B_CELL_NAIVE_36
534.7
B_CELL_NAIVE_37
534.3
B_CELL_NAIVE_38
529.8
B_CELL_NAIVE_39
528.0
B_CELL_NAIVE_40
523.0
B_CELL_NAIVE_41
521.8
B_CELL_NAIVE_42
512.6
B_CELL_NAIVE_43
508.4
B_CELL_NAIVE_44
502.1
B_CELL_NAIVE_45
500.3
B_CELL_NAIVE_46
499.0
B_CELL_NAIVE_47
486.9
B_CELL_NAIVE_48
485.3
B_CELL_NAIVE_49
482.5
B_CELL_NAIVE_50
482.4
B_CELL_NAIVE_51
482.2
B_CELL_NAIVE_52
481.8
B_CELL_NAIVE_53
477.9
B_CELL_NAIVE_54
477.3
B_CELL_NAIVE_55
476.9
B_CELL_NAIVE_56
476.1
B_CELL_NAIVE_57
474.0
B_CELL_NAIVE_58
473.2
B_CELL_NAIVE_59
471.2
B_CELL_NAIVE_60
469.2
B_CELL_NAIVE_61
466.7
B_CELL_NAIVE_62
461.2
B_CELL_NAIVE_63
458.7
B_CELL_NAIVE_64
458.1
B_CELL_NAIVE_65
453.3
B_CELL_NAIVE_66
447.8
B_CELL_NAIVE_67
441.7
B_CELL_NAIVE_68
439.6
B_CELL_NAIVE_69
434.1
B_CELL_NAIVE_70
418.8
B_CELL_NAIVE_71
418.5
B_CELL_NAIVE_72
414.5
B_CELL_NAIVE_73
408.2
B_CELL_NAIVE_74
401.6
B_CELL_NAIVE_75
398.9
B_CELL_NAIVE_76
390.5
B_CELL_NAIVE_77
387.2
B_CELL_NAIVE_78
386.2
B_CELL_NAIVE_79
375.5
B_CELL_NAIVE_80
374.3
B_CELL_NAIVE_81
371.8
B_CELL_NAIVE_82
365.2
B_CELL_NAIVE_83
360.0
B_CELL_NAIVE_84
343.9
B_CELL_NAIVE_85
335.0
B_CELL_NAIVE_86
321.0
B_CELL_NAIVE_87
278.7
B_CELL_NAIVE_88
269.2
B_CELL_NAIVE_89
247.6
B_CELL_NAIVE_90
221.3
B_CELL_NAIVE_91
189.9
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