A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6758.5
nTPM
Monaco:
609.7
nTPM
Schmiedel:
453.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6758.5
HPA sample
nTPM
Classical monocyte nTPM: 6758.5
Samples: 6
Max nTPM: 10393.4
Min nTPM: 4645.3
P10809_1003
10393.4
P10809_1020
5103.4
P10809_1039
7779.4
P10809_1058
5757.7
P10809_1080
4645.3
P10809_1107
6871.7
Intermediate monocyte nTPM: 4696.3
Samples: 6
Max nTPM: 6880.6
Min nTPM: 2537.1
P10809_1004
3274.3
P10809_1023
5794.1
P10809_1042
5145.0
P10809_1061
2537.1
P10809_1081
4546.7
P10809_1108
6880.6
Non-classical monocyte nTPM: 4075.9
Samples: 5
Max nTPM: 5228.4
Min nTPM: 2863.2
P10809_1005
3539.5
P10809_1053
4463.1
P10809_1072
2863.2
P10809_1082
4285.3
P10809_1109
5228.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
609.7
Monaco sample
nTPM
Classical monocyte nTPM: 398.5
Samples: 4
Max nTPM: 486.5
Min nTPM: 292.1
RHH5313_R3680
486.5
RHH5221_R3593
386.4
RHH5250_R3622
292.1
RHH5279_R3651
429.0
Intermediate monocyte nTPM: 609.7
Samples: 4
Max nTPM: 743.9
Min nTPM: 421.2
RHH5314_R3681
554.9
RHH5222_R3594
718.7
RHH5251_R3623
743.9
RHH5280_R3652
421.2
Non-classical monocyte nTPM: 460.5
Samples: 4
Max nTPM: 525.9
Min nTPM: 317.7
RHH5315_R3682
525.9
RHH5223_R3595
490.5
RHH5252_R3624
507.7
RHH5281_R3653
317.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
453.8
Schmiedel sample id
TPM
Classical monocyte TPM: 453.8
Samples: 91
Max TPM: 579.8
Min TPM: 271.1
MONOCYTES_1
579.8
MONOCYTES_2
569.1
MONOCYTES_3
553.8
MONOCYTES_4
551.6
MONOCYTES_5
542.2
MONOCYTES_6
539.1
MONOCYTES_7
535.8
MONOCYTES_8
535.8
MONOCYTES_9
530.5
MONOCYTES_10
529.4
MONOCYTES_11
528.2
MONOCYTES_12
527.5
MONOCYTES_13
526.2
MONOCYTES_14
525.2
MONOCYTES_15
523.5
MONOCYTES_16
519.9
MONOCYTES_17
518.9
MONOCYTES_18
514.4
MONOCYTES_19
514.3
MONOCYTES_20
508.2
MONOCYTES_21
507.2
MONOCYTES_22
506.1
MONOCYTES_23
503.9
MONOCYTES_24
503.2
MONOCYTES_25
501.8
MONOCYTES_26
501.3
MONOCYTES_27
500.8
MONOCYTES_28
498.8
MONOCYTES_29
497.2
MONOCYTES_30
493.7
MONOCYTES_31
487.3
MONOCYTES_32
483.9
MONOCYTES_33
483.9
MONOCYTES_34
481.0
MONOCYTES_35
480.2
MONOCYTES_36
479.5
MONOCYTES_37
476.9
MONOCYTES_38
475.1
MONOCYTES_39
473.5
MONOCYTES_40
471.8
MONOCYTES_41
471.0
MONOCYTES_42
470.5
MONOCYTES_43
468.9
MONOCYTES_44
467.7
MONOCYTES_45
466.5
MONOCYTES_46
465.4
MONOCYTES_47
462.1
MONOCYTES_48
460.1
MONOCYTES_49
459.2
MONOCYTES_50
457.3
MONOCYTES_51
457.2
MONOCYTES_52
453.8
MONOCYTES_53
452.9
MONOCYTES_54
451.7
MONOCYTES_55
451.1
MONOCYTES_56
450.0
MONOCYTES_57
444.9
MONOCYTES_58
443.4
MONOCYTES_59
441.2
MONOCYTES_60
440.0
MONOCYTES_61
430.8
MONOCYTES_62
430.1
MONOCYTES_63
429.2
MONOCYTES_64
429.0
MONOCYTES_65
425.3
MONOCYTES_66
422.3
MONOCYTES_67
418.5
MONOCYTES_68
416.9
MONOCYTES_69
416.3
MONOCYTES_70
407.0
MONOCYTES_71
398.2
MONOCYTES_72
396.6
MONOCYTES_73
394.9
MONOCYTES_74
391.6
MONOCYTES_75
391.5
MONOCYTES_76
375.7
MONOCYTES_77
370.6
MONOCYTES_78
368.0
MONOCYTES_79
367.9
MONOCYTES_80
361.3
MONOCYTES_81
360.8
MONOCYTES_82
359.6
MONOCYTES_83
356.3
MONOCYTES_84
355.0
MONOCYTES_85
351.2
MONOCYTES_86
345.4
MONOCYTES_87
324.2
MONOCYTES_88
323.9
MONOCYTES_89
300.9
MONOCYTES_90
287.2
MONOCYTES_91
271.1
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Non-classical monocyte TPM: 352.2
Samples: 90
Max TPM: 545.8
Min TPM: 172.8
M2_1
545.8
M2_2
494.7
M2_3
440.0
M2_4
434.7
M2_5
433.0
M2_6
428.3
M2_7
427.9
M2_8
421.1
M2_9
420.7
M2_10
419.8
M2_11
416.6
M2_12
413.7
M2_13
413.1
M2_14
411.5
M2_15
410.3
M2_16
409.7
M2_17
409.6
M2_18
408.1
M2_19
405.6
M2_20
405.2
M2_21
405.0
M2_22
402.5
M2_23
400.8
M2_24
400.7
M2_25
396.5
M2_26
396.1
M2_27
395.7
M2_28
394.9
M2_29
394.8
M2_30
392.8
M2_31
388.5
M2_32
385.2
M2_33
380.2
M2_34
376.8
M2_35
375.9
M2_36
371.8
M2_37
371.7
M2_38
371.3
M2_39
370.5
M2_40
370.3
M2_41
369.4
M2_42
368.4
M2_43
365.0
M2_44
364.5
M2_45
364.2
M2_46
358.6
M2_47
357.0
M2_48
354.8
M2_49
354.5
M2_50
353.0
M2_51
349.3
M2_52
344.6
M2_53
343.6
M2_54
338.5
M2_55
338.2
M2_56
337.8
M2_57
336.2
M2_58
333.3
M2_59
330.0
M2_60
328.8
M2_61
328.2
M2_62
327.5
M2_63
321.7
M2_64
321.3
M2_65
319.1
M2_66
317.6
M2_67
316.9
M2_68
316.8
M2_69
306.5
M2_70
305.0
M2_71
302.4
M2_72
299.0
M2_73
297.8
M2_74
295.8
M2_75
288.4
M2_76
288.0
M2_77
284.0
M2_78
281.0
M2_79
272.0
M2_80
271.6
M2_81
271.5
M2_82
267.0
M2_83
251.4
M2_84
243.6
M2_85
241.5
M2_86
241.3
M2_87
233.8
M2_88
213.8
M2_89
202.3
M2_90
172.8
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