A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6744.7
nTPM
Monaco:
390.2
nTPM
Schmiedel:
500.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6744.7
HPA sample
nTPM
NK-cell nTPM: 6744.7
Samples: 6
Max nTPM: 9438.1
Min nTPM: 3446.7
P10809_1013
4241.4
P10809_1033
9438.1
P10809_1052
7408.4
P10809_1071
8720.1
P10809_1093
3446.7
P10809_1103
7213.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
390.2
Monaco sample
nTPM
NK-cell nTPM: 390.3
Samples: 4
Max nTPM: 451.6
Min nTPM: 300.2
RHH5316_R3683
398.1
RHH5224_R3596
300.2
RHH5253_R3625
411.1
RHH5282_R3654
451.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
500.6
Schmiedel sample id
TPM
NK-cell TPM: 500.6
Samples: 90
Max TPM: 899.2
Min TPM: 256.8
NK_1
899.2
NK_2
795.7
NK_3
755.9
NK_4
681.1
NK_5
680.8
NK_6
647.0
NK_7
644.6
NK_8
628.9
NK_9
624.0
NK_10
617.8
NK_11
611.9
NK_12
610.8
NK_13
609.9
NK_14
601.4
NK_15
595.2
NK_16
593.6
NK_17
591.5
NK_18
587.2
NK_19
581.9
NK_20
581.5
NK_21
575.7
NK_22
558.5
NK_23
555.3
NK_24
552.9
NK_25
549.0
NK_26
544.9
NK_27
541.0
NK_28
537.6
NK_29
531.5
NK_30
528.6
NK_31
524.8
NK_32
523.4
NK_33
522.8
NK_34
520.2
NK_35
519.9
NK_36
512.4
NK_37
511.2
NK_38
509.0
NK_39
503.7
NK_40
502.9
NK_41
502.8
NK_42
502.2
NK_43
498.6
NK_44
497.4
NK_45
496.3
NK_46
495.2
NK_47
491.7
NK_48
490.6
NK_49
490.0
NK_50
488.3
NK_51
487.7
NK_52
485.2
NK_53
484.5
NK_54
483.2
NK_55
479.6
NK_56
479.0
NK_57
474.1
NK_58
472.8
NK_59
466.1
NK_60
465.8
NK_61
464.1
NK_62
460.7
NK_63
459.4
NK_64
457.1
NK_65
456.9
NK_66
455.1
NK_67
449.0
NK_68
446.8
NK_69
437.8
NK_70
435.5
NK_71
432.7
NK_72
429.8
NK_73
426.0
NK_74
420.2
NK_75
417.5
NK_76
408.5
NK_77
403.5
NK_78
403.3
NK_79
379.7
NK_80
379.7
NK_81
365.9
NK_82
355.2
NK_83
340.5
NK_84
327.9
NK_85
316.4
NK_86
305.8
NK_87
301.8
NK_88
300.0
NK_89
264.7
NK_90
256.8
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