A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.7
nTPM
Monaco:
88.6
nTPM
Schmiedel:
205.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.7
HPA sample
nTPM
Memory B-cell nTPM: 11.8
Samples: 6
Max nTPM: 16.1
Min nTPM: 7.1
P10809_1017
16.1
P10809_1025
10.3
P10809_1044
14.4
P10809_1063
13.5
P10809_1092
7.1
P10809_1105
9.1
Naive B-cell nTPM: 9.6
Samples: 6
Max nTPM: 13.1
Min nTPM: 5.9
P10809_1011
13.1
P10809_1029
7.6
P10809_1048
5.9
P10809_1067
11.3
P10809_1091
8.5
P10809_1104
11.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 66.0
Samples: 4
Max nTPM: 84.1
Min nTPM: 42.0
RHH5310_R3677
71.3
RHH5218_R3590
66.7
RHH5247_R3619
42.0
RHH5276_R3648
84.1
Naive B-cell nTPM: 54.5
Samples: 4
Max nTPM: 68.8
Min nTPM: 29.0
RHH5308_R3675
29.0
RHH5216_R3588
66.8
RHH5245_R3617
68.8
RHH5274_R3646
53.5
Non-switched memory B-cell nTPM: 53.7
Samples: 4
Max nTPM: 66.3
Min nTPM: 41.4
RHH5309_R3676
41.4
RHH5217_R3589
57.5
RHH5246_R3618
49.4
RHH5275_R3647
66.3
Plasmablast nTPM: 88.6
Samples: 4
Max nTPM: 114.7
Min nTPM: 75.6
RHH5312_R3679
82.4
RHH5220_R3592
114.7
RHH5249_R3621
75.6
RHH5278_R3650
81.5
Switched memory B-cell nTPM: 76.7
Samples: 4
Max nTPM: 84.6
Min nTPM: 71.7
RHH5311_R3678
71.7
RHH5219_R3591
77.2
RHH5248_R3620
84.6
RHH5277_R3649
73.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
205.4
Schmiedel sample id
TPM
Naive B-cell TPM: 205.4
Samples: 91
Max TPM: 313.1
Min TPM: 123.8
B_CELL_NAIVE_1
313.1
B_CELL_NAIVE_2
306.8
B_CELL_NAIVE_3
306.7
B_CELL_NAIVE_4
302.5
B_CELL_NAIVE_5
290.0
B_CELL_NAIVE_6
280.1
B_CELL_NAIVE_7
263.2
B_CELL_NAIVE_8
260.6
B_CELL_NAIVE_9
243.5
B_CELL_NAIVE_10
241.8
B_CELL_NAIVE_11
241.4
B_CELL_NAIVE_12
239.4
B_CELL_NAIVE_13
239.3
B_CELL_NAIVE_14
237.4
B_CELL_NAIVE_15
236.3
B_CELL_NAIVE_16
235.6
B_CELL_NAIVE_17
233.5
B_CELL_NAIVE_18
229.5
B_CELL_NAIVE_19
222.3
B_CELL_NAIVE_20
220.7
B_CELL_NAIVE_21
220.6
B_CELL_NAIVE_22
219.2
B_CELL_NAIVE_23
215.6
B_CELL_NAIVE_24
215.5
B_CELL_NAIVE_25
215.4
B_CELL_NAIVE_26
214.4
B_CELL_NAIVE_27
214.2
B_CELL_NAIVE_28
213.9
B_CELL_NAIVE_29
213.8
B_CELL_NAIVE_30
213.7
B_CELL_NAIVE_31
211.8
B_CELL_NAIVE_32
210.5
B_CELL_NAIVE_33
210.2
B_CELL_NAIVE_34
208.9
B_CELL_NAIVE_35
208.9
B_CELL_NAIVE_36
208.8
B_CELL_NAIVE_37
207.4
B_CELL_NAIVE_38
207.2
B_CELL_NAIVE_39
207.2
B_CELL_NAIVE_40
207.0
B_CELL_NAIVE_41
205.8
B_CELL_NAIVE_42
205.5
B_CELL_NAIVE_43
205.4
B_CELL_NAIVE_44
204.4
B_CELL_NAIVE_45
204.3
B_CELL_NAIVE_46
204.2
B_CELL_NAIVE_47
202.7
B_CELL_NAIVE_48
202.2
B_CELL_NAIVE_49
201.3
B_CELL_NAIVE_50
200.3
B_CELL_NAIVE_51
198.9
B_CELL_NAIVE_52
198.4
B_CELL_NAIVE_53
198.2
B_CELL_NAIVE_54
197.2
B_CELL_NAIVE_55
195.6
B_CELL_NAIVE_56
193.7
B_CELL_NAIVE_57
192.7
B_CELL_NAIVE_58
189.6
B_CELL_NAIVE_59
188.2
B_CELL_NAIVE_60
188.0
B_CELL_NAIVE_61
187.3
B_CELL_NAIVE_62
186.7
B_CELL_NAIVE_63
186.1
B_CELL_NAIVE_64
185.9
B_CELL_NAIVE_65
185.6
B_CELL_NAIVE_66
183.1
B_CELL_NAIVE_67
182.3
B_CELL_NAIVE_68
182.2
B_CELL_NAIVE_69
181.9
B_CELL_NAIVE_70
181.8
B_CELL_NAIVE_71
181.0
B_CELL_NAIVE_72
178.0
B_CELL_NAIVE_73
177.6
B_CELL_NAIVE_74
175.9
B_CELL_NAIVE_75
175.3
B_CELL_NAIVE_76
175.3
B_CELL_NAIVE_77
173.2
B_CELL_NAIVE_78
172.6
B_CELL_NAIVE_79
171.1
B_CELL_NAIVE_80
169.8
B_CELL_NAIVE_81
169.5
B_CELL_NAIVE_82
168.8
B_CELL_NAIVE_83
168.4
B_CELL_NAIVE_84
166.3
B_CELL_NAIVE_85
162.7
B_CELL_NAIVE_86
157.3
B_CELL_NAIVE_87
156.8
B_CELL_NAIVE_88
155.1
B_CELL_NAIVE_89
155.0
B_CELL_NAIVE_90
150.3
B_CELL_NAIVE_91
123.8
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