A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.7
nTPM
Monaco:
75.6
nTPM
Schmiedel:
157.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
HPA sample
nTPM
Classical monocyte nTPM: 6.0
Samples: 6
Max nTPM: 7.2
Min nTPM: 4.8
P10809_1003
7.2
P10809_1020
7.0
P10809_1039
4.8
P10809_1058
5.1
P10809_1080
5.9
P10809_1107
6.0
Intermediate monocyte nTPM: 7.3
Samples: 6
Max nTPM: 12.1
Min nTPM: 4.8
P10809_1004
12.1
P10809_1023
6.9
P10809_1042
4.8
P10809_1061
6.9
P10809_1081
6.6
P10809_1108
6.4
Non-classical monocyte nTPM: 9.7
Samples: 5
Max nTPM: 12.5
Min nTPM: 7.0
P10809_1005
12.5
P10809_1053
11.2
P10809_1072
10.3
P10809_1082
7.7
P10809_1109
7.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.6
Monaco sample
nTPM
Classical monocyte nTPM: 50.8
Samples: 4
Max nTPM: 63.5
Min nTPM: 43.4
RHH5313_R3680
51.4
RHH5221_R3593
63.5
RHH5250_R3622
45.0
RHH5279_R3651
43.4
Intermediate monocyte nTPM: 64.8
Samples: 4
Max nTPM: 89.0
Min nTPM: 45.3
RHH5314_R3681
45.3
RHH5222_R3594
89.0
RHH5251_R3623
74.5
RHH5280_R3652
50.5
Non-classical monocyte nTPM: 75.5
Samples: 4
Max nTPM: 100.6
Min nTPM: 63.8
RHH5315_R3682
63.8
RHH5223_R3595
100.6
RHH5252_R3624
70.7
RHH5281_R3653
67.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
157.2
Schmiedel sample id
TPM
Classical monocyte TPM: 82.8
Samples: 91
Max TPM: 112.4
Min TPM: 58.8
MONOCYTES_1
112.4
MONOCYTES_2
103.2
MONOCYTES_3
103.1
MONOCYTES_4
100.2
MONOCYTES_5
99.4
MONOCYTES_6
99.0
MONOCYTES_7
98.8
MONOCYTES_8
98.6
MONOCYTES_9
97.7
MONOCYTES_10
95.0
MONOCYTES_11
94.8
MONOCYTES_12
94.7
MONOCYTES_13
94.6
MONOCYTES_14
94.6
MONOCYTES_15
94.1
MONOCYTES_16
93.4
MONOCYTES_17
92.4
MONOCYTES_18
92.4
MONOCYTES_19
92.0
MONOCYTES_20
91.6
MONOCYTES_21
91.5
MONOCYTES_22
91.4
MONOCYTES_23
90.9
MONOCYTES_24
90.3
MONOCYTES_25
90.1
MONOCYTES_26
89.4
MONOCYTES_27
88.9
MONOCYTES_28
88.1
MONOCYTES_29
87.7
MONOCYTES_30
87.7
MONOCYTES_31
87.5
MONOCYTES_32
87.4
MONOCYTES_33
87.1
MONOCYTES_34
86.5
MONOCYTES_35
86.4
MONOCYTES_36
86.3
MONOCYTES_37
86.1
MONOCYTES_38
85.1
MONOCYTES_39
84.2
MONOCYTES_40
82.7
MONOCYTES_41
82.6
MONOCYTES_42
82.4
MONOCYTES_43
82.2
MONOCYTES_44
81.6
MONOCYTES_45
81.6
MONOCYTES_46
81.1
MONOCYTES_47
81.0
MONOCYTES_48
80.9
MONOCYTES_49
80.1
MONOCYTES_50
79.9
MONOCYTES_51
79.5
MONOCYTES_52
79.4
MONOCYTES_53
79.3
MONOCYTES_54
78.6
MONOCYTES_55
78.6
MONOCYTES_56
78.2
MONOCYTES_57
78.2
MONOCYTES_58
77.8
MONOCYTES_59
77.8
MONOCYTES_60
77.6
MONOCYTES_61
77.2
MONOCYTES_62
77.2
MONOCYTES_63
76.8
MONOCYTES_64
76.6
MONOCYTES_65
75.8
MONOCYTES_66
75.4
MONOCYTES_67
74.9
MONOCYTES_68
74.8
MONOCYTES_69
74.7
MONOCYTES_70
74.6
MONOCYTES_71
74.6
MONOCYTES_72
74.2
MONOCYTES_73
74.2
MONOCYTES_74
74.2
MONOCYTES_75
73.6
MONOCYTES_76
73.4
MONOCYTES_77
73.0
MONOCYTES_78
72.9
MONOCYTES_79
72.9
MONOCYTES_80
72.6
MONOCYTES_81
71.4
MONOCYTES_82
71.1
MONOCYTES_83
70.5
MONOCYTES_84
70.1
MONOCYTES_85
69.8
MONOCYTES_86
69.0
MONOCYTES_87
68.3
MONOCYTES_88
66.8
MONOCYTES_89
65.5
MONOCYTES_90
63.9
MONOCYTES_91
58.8
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Non-classical monocyte TPM: 157.2
Samples: 90
Max TPM: 233.9
Min TPM: 109.0
M2_1
233.9
M2_2
233.5
M2_3
227.0
M2_4
223.6
M2_5
204.3
M2_6
203.3
M2_7
190.6
M2_8
189.9
M2_9
187.6
M2_10
187.5
M2_11
187.4
M2_12
186.8
M2_13
186.5
M2_14
184.9
M2_15
184.0
M2_16
181.6
M2_17
180.9
M2_18
180.5
M2_19
179.1
M2_20
178.5
M2_21
175.9
M2_22
175.2
M2_23
173.8
M2_24
173.5
M2_25
172.7
M2_26
171.2
M2_27
169.6
M2_28
167.6
M2_29
166.6
M2_30
164.8
M2_31
163.4
M2_32
161.8
M2_33
161.1
M2_34
160.5
M2_35
159.4
M2_36
159.0
M2_37
158.6
M2_38
158.3
M2_39
158.3
M2_40
157.3
M2_41
157.2
M2_42
156.5
M2_43
154.7
M2_44
154.4
M2_45
153.6
M2_46
153.4
M2_47
151.9
M2_48
151.7
M2_49
151.4
M2_50
151.1
M2_51
151.0
M2_52
150.3
M2_53
149.1
M2_54
147.8
M2_55
147.0
M2_56
146.4
M2_57
146.3
M2_58
145.9
M2_59
142.6
M2_60
142.2
M2_61
141.4
M2_62
141.0
M2_63
140.8
M2_64
139.8
M2_65
139.5
M2_66
138.8
M2_67
137.7
M2_68
137.2
M2_69
137.0
M2_70
136.3
M2_71
133.2
M2_72
132.8
M2_73
132.6
M2_74
132.3
M2_75
131.9
M2_76
131.7
M2_77
129.9
M2_78
129.3
M2_79
128.9
M2_80
128.6
M2_81
128.0
M2_82
127.8
M2_83
127.2
M2_84
124.6
M2_85
124.4
M2_86
124.3
M2_87
121.8
M2_88
121.0
M2_89
118.3
M2_90
109.0
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