A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.4
nTPM
Monaco:
75.6
nTPM
Schmiedel:
196.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.4
HPA sample
nTPM
NK-cell nTPM: 10.5
Samples: 6
Max nTPM: 16.3
Min nTPM: 5.9
P10809_1013
13.7
P10809_1033
12.1
P10809_1052
8.7
P10809_1071
16.3
P10809_1093
5.9
P10809_1103
6.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.6
Monaco sample
nTPM
NK-cell nTPM: 75.6
Samples: 4
Max nTPM: 84.6
Min nTPM: 56.8
RHH5316_R3683
56.8
RHH5224_R3596
80.0
RHH5253_R3625
81.1
RHH5282_R3654
84.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
196.2
Schmiedel sample id
TPM
NK-cell TPM: 196.2
Samples: 90
Max TPM: 312.9
Min TPM: 129.3
NK_1
312.9
NK_2
302.7
NK_3
290.9
NK_4
278.5
NK_5
274.8
NK_6
253.5
NK_7
253.3
NK_8
253.0
NK_9
249.9
NK_10
245.4
NK_11
242.7
NK_12
242.7
NK_13
238.8
NK_14
231.4
NK_15
228.2
NK_16
228.2
NK_17
225.9
NK_18
222.4
NK_19
218.1
NK_20
217.5
NK_21
217.2
NK_22
216.9
NK_23
213.6
NK_24
212.6
NK_25
212.6
NK_26
212.6
NK_27
211.6
NK_28
210.4
NK_29
208.3
NK_30
208.1
NK_31
207.8
NK_32
207.8
NK_33
205.9
NK_34
205.1
NK_35
198.9
NK_36
198.8
NK_37
197.5
NK_38
197.5
NK_39
195.8
NK_40
193.8
NK_41
193.8
NK_42
192.5
NK_43
191.1
NK_44
189.4
NK_45
188.3
NK_46
187.6
NK_47
186.6
NK_48
186.5
NK_49
186.1
NK_50
183.3
NK_51
183.1
NK_52
182.0
NK_53
181.9
NK_54
181.9
NK_55
180.3
NK_56
178.9
NK_57
177.7
NK_58
177.3
NK_59
177.3
NK_60
176.4
NK_61
176.1
NK_62
174.9
NK_63
174.9
NK_64
172.8
NK_65
172.4
NK_66
171.8
NK_67
170.5
NK_68
169.8
NK_69
168.4
NK_70
167.8
NK_71
166.9
NK_72
166.8
NK_73
166.7
NK_74
165.9
NK_75
165.6
NK_76
164.8
NK_77
163.9
NK_78
162.7
NK_79
162.2
NK_80
159.5
NK_81
156.1
NK_82
155.5
NK_83
155.1
NK_84
153.5
NK_85
150.3
NK_86
147.7
NK_87
147.5
NK_88
143.1
NK_89
132.9
NK_90
129.3
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