MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.5 nTPM
HPA Brain:49.6 nTPM
GTEx:57.5 nTPM
FANTOM5:101.8 Scaled Tags Per Million
Pig:73.2 nTPM
Mouse:75.5 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2828 Female, age 72, unknown 66.7
1870 Female, age 42, unknown 45.9
1827 Male, age 72, unknown 42.7
2666 Male, age 74, left hemisphere 39.4
1833 Male, age 53, unknown 38.3
2219 Male, age 76, both hemispheres 37.4
2411 Female, age 72, unknown 37.2
1830 Male, age 51, unknown 36.8
2019 Male, age 18, unknown 33.9
2586 Male, age 75, left hemisphere 33.6
Dorsal raphe nucleus
nTPM: 48.4
2016 Female, age 72, unknown 58.3
1828 Male, age 53, unknown 49.6
2298 Female, age 72, unknown 48.5
2047 Male, age 72, unknown 43.2
2750 Male, age 76, both hemispheres 42.3
Inferior colliculus
nTPM: 43.4
1848 Female, age 42, unknown 47.2
2849 Male, age 72, unknown 46.6
1890 Male, age 53, unknown 42.0
2097 Female, age 72, unknown 37.8
Median raphe nucleus
nTPM: 40.7
2220 Male, age 76, midline 40.7
Periaquaductal grey, anterior
nTPM: 43.1
1947 Male, age 18, unknown 45.0
1795 Male, age 51, unknown 43.7
2502 Female, age 75, unknown 40.6
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 58.2
1840 Male, age 53, unknown 51.5
1831 Male, age 72, unknown 45.4
2464 Female, age 72, unknown 43.2
Periaquaductal grey, lateral
nTPM: 47.1
2140 Male, age 76, both hemispheres 55.2
2053 Male, age 18, unknown 54.0
2272 Male, age 74, both hemispheres 31.9
Pretectal area
nTPM: 45.5
2316 Male, age 76, right hemisphere 55.8
2224 Female, age 72, unknown 51.4
2825 Male, age 18, unknown 50.5
2667 Female, age 75, unknown 49.8
1815 Male, age 53, unknown 47.5
2273 Male, age 74, both hemispheres 47.4
2407 Male, age 75, both hemispheres 46.3
1817 Female, age 42, unknown 41.8
1816 Male, age 51, unknown 39.8
1944 Female, age 72, unknown 39.6
2007 Male, age 72, unknown 30.8
Red nucleus
nTPM: 46.8
2503 Female, age 72, unknown 61.0
2823 Male, age 76, right hemisphere 53.4
1865 Male, age 51, unknown 51.5
1821 Female, age 72, unknown 51.1
1904 Male, age 53, unknown 50.4
2725 Female, age 75, unknown 49.9
2769 Male, age 72, unknown 48.6
2227 Male, age 72, unknown 46.2
1954 Female, age 42, unknown 45.9
2588 Male, age 74, left hemisphere 41.5
2785 Male, age 18, unknown 32.5
2584 Male, age 75, left hemisphere 29.5
Substantia nigra
nTPM: 45.6
2699 Male, age 18, unknown 73.4
1851 Male, age 51, unknown 51.9
2241 Male, age 72, unknown 48.6
1916 Female, age 42, unknown 45.7
2409 Female, age 72, unknown 45.3
2590 Female, age 75, unknown 41.8
2665 Male, age 74, both hemispheres 40.8
1889 Female, age 72, unknown 38.2
2583 Male, age 75, right hemisphere 36.9
1941 Male, age 53, unknown 33.2
Superior colliculus
nTPM: 44.8
1995 Male, age 72, unknown 59.0
1913 Female, age 42, unknown 56.5
1796 Male, age 53, unknown 47.4
2087 Female, age 72, unknown 45.9
2664 Male, age 75, both hemispheres 44.2
2587 Male, age 74, left hemisphere 42.3
2668 Female, age 75, unknown 41.5
1839 Male, age 51, unknown 39.9
1895 Male, age 76, right hemisphere 38.9
2261 Male, age 18, unknown 32.4
Ventral tegmental area
nTPM: 44.8
1915 Female, age 42, unknown 48.9
2021 Male, age 53, unknown 48.5
1942 Male, age 51, unknown 46.3
2410 Female, age 72, unknown 43.2
2223 Female, age 72, unknown 42.5
2218 Male, age 76, both hemispheres 39.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.5
Samples: 183

Max nTPM: 272.2
Min nTPM: 7.8
Std nTPM: 43.2
Median nTPM: 46.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 272.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 270.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 239.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 220.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 190.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 180.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 169.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 153.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 144.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 130.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 126.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.8
FF:10158-103A5 76 years, female 101.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.2
Samples: 4

Max nTPM: 81.7
Min nTPM: 66.9
Sample A Female 81.7
Sample B Female 66.9
Sample C Male 73.9
Sample D Male 70.2
Midbrain
nTPM: 69.1
Samples: 4

Max nTPM: 95.2
Min nTPM: 41.9
Sample A Female 95.2
Sample B Female 77.8
Sample C Male 61.4
Sample D Male 41.9
Periaqueductal gray
nTPM: 68.0
Samples: 3

Max nTPM: 78.4
Min nTPM: 58.7
Sample B Female 78.4
Sample C Male 66.9
Sample D Male 58.7
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 63.3
Min nTPM: 47.5
Sample A Female 61.6
Sample B Female 47.5
Sample C Male 60.3
Sample D Male 63.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 75.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.5
Samples: 4

Max nTPM: 80.1
Min nTPM: 70.8
Sample A Male 80.1
Sample B Male 70.8
Sample C Female 75.0
Sample D Female 76.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68193021 Antisense, RP_040825_01_A10, Mouse strain C57BL/6J (56 days, male) 2.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo