A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
963.4
nTPM
Monaco:
264.5
nTPM
Schmiedel:
396.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
963.4
HPA sample
nTPM
Memory B-cell nTPM: 963.4
Samples: 6
Max nTPM: 1595.2
Min nTPM: 776.5
P10809_1017
791.2
P10809_1025
951.0
P10809_1044
1595.2
P10809_1063
880.6
P10809_1092
776.5
P10809_1105
785.8
Naive B-cell nTPM: 733.0
Samples: 6
Max nTPM: 1319.1
Min nTPM: 466.8
P10809_1011
466.8
P10809_1029
657.6
P10809_1048
1319.1
P10809_1067
753.6
P10809_1091
562.2
P10809_1104
638.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
264.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 131.7
Samples: 4
Max nTPM: 234.6
Min nTPM: 39.4
RHH5310_R3677
127.0
RHH5218_R3590
39.4
RHH5247_R3619
234.6
RHH5276_R3648
125.8
Naive B-cell nTPM: 84.9
Samples: 4
Max nTPM: 134.2
Min nTPM: 61.1
RHH5308_R3675
67.1
RHH5216_R3588
61.1
RHH5245_R3617
134.2
RHH5274_R3646
77.4
Non-switched memory B-cell nTPM: 74.0
Samples: 4
Max nTPM: 110.8
Min nTPM: 43.8
RHH5309_R3676
87.8
RHH5217_R3589
53.4
RHH5246_R3618
43.8
RHH5275_R3647
110.8
Plasmablast nTPM: 264.5
Samples: 4
Max nTPM: 326.6
Min nTPM: 198.8
RHH5312_R3679
326.6
RHH5220_R3592
198.8
RHH5249_R3621
230.6
RHH5278_R3650
302.0
Switched memory B-cell nTPM: 71.1
Samples: 4
Max nTPM: 81.0
Min nTPM: 54.3
RHH5311_R3678
72.7
RHH5219_R3591
76.5
RHH5248_R3620
54.3
RHH5277_R3649
81.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
396.3
Schmiedel sample id
TPM
Naive B-cell TPM: 396.3
Samples: 91
Max TPM: 580.9
Min TPM: 283.2
B_CELL_NAIVE_1
580.9
B_CELL_NAIVE_2
557.1
B_CELL_NAIVE_3
544.8
B_CELL_NAIVE_4
535.9
B_CELL_NAIVE_5
526.3
B_CELL_NAIVE_6
519.2
B_CELL_NAIVE_7
494.6
B_CELL_NAIVE_8
490.4
B_CELL_NAIVE_9
488.9
B_CELL_NAIVE_10
485.5
B_CELL_NAIVE_11
479.9
B_CELL_NAIVE_12
478.6
B_CELL_NAIVE_13
475.3
B_CELL_NAIVE_14
469.6
B_CELL_NAIVE_15
463.8
B_CELL_NAIVE_16
461.8
B_CELL_NAIVE_17
458.8
B_CELL_NAIVE_18
455.5
B_CELL_NAIVE_19
454.1
B_CELL_NAIVE_20
453.6
B_CELL_NAIVE_21
452.3
B_CELL_NAIVE_22
452.3
B_CELL_NAIVE_23
442.4
B_CELL_NAIVE_24
441.8
B_CELL_NAIVE_25
440.2
B_CELL_NAIVE_26
438.7
B_CELL_NAIVE_27
437.7
B_CELL_NAIVE_28
437.5
B_CELL_NAIVE_29
435.7
B_CELL_NAIVE_30
431.1
B_CELL_NAIVE_31
427.2
B_CELL_NAIVE_32
421.4
B_CELL_NAIVE_33
420.1
B_CELL_NAIVE_34
411.3
B_CELL_NAIVE_35
409.6
B_CELL_NAIVE_36
406.6
B_CELL_NAIVE_37
405.8
B_CELL_NAIVE_38
403.2
B_CELL_NAIVE_39
396.9
B_CELL_NAIVE_40
395.9
B_CELL_NAIVE_41
395.5
B_CELL_NAIVE_42
392.1
B_CELL_NAIVE_43
391.3
B_CELL_NAIVE_44
388.6
B_CELL_NAIVE_45
384.6
B_CELL_NAIVE_46
383.3
B_CELL_NAIVE_47
381.6
B_CELL_NAIVE_48
380.7
B_CELL_NAIVE_49
380.4
B_CELL_NAIVE_50
380.0
B_CELL_NAIVE_51
379.5
B_CELL_NAIVE_52
378.4
B_CELL_NAIVE_53
378.1
B_CELL_NAIVE_54
377.6
B_CELL_NAIVE_55
376.0
B_CELL_NAIVE_56
371.1
B_CELL_NAIVE_57
370.1
B_CELL_NAIVE_58
369.1
B_CELL_NAIVE_59
368.6
B_CELL_NAIVE_60
366.2
B_CELL_NAIVE_61
364.9
B_CELL_NAIVE_62
356.5
B_CELL_NAIVE_63
355.9
B_CELL_NAIVE_64
352.2
B_CELL_NAIVE_65
349.7
B_CELL_NAIVE_66
345.9
B_CELL_NAIVE_67
344.5
B_CELL_NAIVE_68
342.2
B_CELL_NAIVE_69
341.5
B_CELL_NAIVE_70
340.6
B_CELL_NAIVE_71
339.6
B_CELL_NAIVE_72
336.5
B_CELL_NAIVE_73
335.0
B_CELL_NAIVE_74
332.5
B_CELL_NAIVE_75
329.3
B_CELL_NAIVE_76
329.1
B_CELL_NAIVE_77
328.7
B_CELL_NAIVE_78
328.3
B_CELL_NAIVE_79
324.3
B_CELL_NAIVE_80
323.2
B_CELL_NAIVE_81
321.1
B_CELL_NAIVE_82
316.2
B_CELL_NAIVE_83
315.2
B_CELL_NAIVE_84
310.0
B_CELL_NAIVE_85
297.6
B_CELL_NAIVE_86
294.5
B_CELL_NAIVE_87
290.7
B_CELL_NAIVE_88
289.4
B_CELL_NAIVE_89
285.2
B_CELL_NAIVE_90
283.8
B_CELL_NAIVE_91
283.2
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