A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
604.8
nTPM
Monaco:
101.4
nTPM
Schmiedel:
486.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
604.8
HPA sample
nTPM
Classical monocyte nTPM: 604.8
Samples: 6
Max nTPM: 790.1
Min nTPM: 410.0
P10809_1003
660.2
P10809_1020
592.8
P10809_1039
790.1
P10809_1058
540.9
P10809_1080
410.0
P10809_1107
634.7
Intermediate monocyte nTPM: 583.3
Samples: 6
Max nTPM: 738.8
Min nTPM: 461.6
P10809_1004
461.6
P10809_1023
678.6
P10809_1042
619.0
P10809_1061
539.1
P10809_1081
462.4
P10809_1108
738.8
Non-classical monocyte nTPM: 545.1
Samples: 5
Max nTPM: 720.0
Min nTPM: 434.8
P10809_1005
453.2
P10809_1053
522.8
P10809_1072
594.9
P10809_1082
434.8
P10809_1109
720.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.4
Monaco sample
nTPM
Classical monocyte nTPM: 70.2
Samples: 4
Max nTPM: 92.8
Min nTPM: 50.1
RHH5313_R3680
92.8
RHH5221_R3593
74.7
RHH5250_R3622
50.1
RHH5279_R3651
63.2
Intermediate monocyte nTPM: 101.4
Samples: 4
Max nTPM: 140.0
Min nTPM: 74.9
RHH5314_R3681
87.6
RHH5222_R3594
140.0
RHH5251_R3623
103.2
RHH5280_R3652
74.9
Non-classical monocyte nTPM: 84.2
Samples: 4
Max nTPM: 113.3
Min nTPM: 43.9
RHH5315_R3682
107.1
RHH5223_R3595
113.3
RHH5252_R3624
72.7
RHH5281_R3653
43.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
486.2
Schmiedel sample id
TPM
Classical monocyte TPM: 486.2
Samples: 91
Max TPM: 682.5
Min TPM: 359.8
MONOCYTES_1
682.5
MONOCYTES_2
671.6
MONOCYTES_3
638.1
MONOCYTES_4
636.4
MONOCYTES_5
627.6
MONOCYTES_6
627.2
MONOCYTES_7
588.6
MONOCYTES_8
583.2
MONOCYTES_9
579.7
MONOCYTES_10
573.6
MONOCYTES_11
569.0
MONOCYTES_12
558.9
MONOCYTES_13
556.3
MONOCYTES_14
553.6
MONOCYTES_15
550.6
MONOCYTES_16
539.2
MONOCYTES_17
535.2
MONOCYTES_18
529.0
MONOCYTES_19
528.7
MONOCYTES_20
522.4
MONOCYTES_21
519.8
MONOCYTES_22
519.7
MONOCYTES_23
517.0
MONOCYTES_24
515.3
MONOCYTES_25
514.4
MONOCYTES_26
513.3
MONOCYTES_27
508.2
MONOCYTES_28
507.2
MONOCYTES_29
506.2
MONOCYTES_30
504.9
MONOCYTES_31
504.8
MONOCYTES_32
504.0
MONOCYTES_33
503.7
MONOCYTES_34
501.8
MONOCYTES_35
497.2
MONOCYTES_36
494.3
MONOCYTES_37
491.2
MONOCYTES_38
491.1
MONOCYTES_39
490.8
MONOCYTES_40
489.6
MONOCYTES_41
489.2
MONOCYTES_42
484.8
MONOCYTES_43
484.7
MONOCYTES_44
482.5
MONOCYTES_45
478.9
MONOCYTES_46
477.8
MONOCYTES_47
472.5
MONOCYTES_48
471.7
MONOCYTES_49
468.1
MONOCYTES_50
467.3
MONOCYTES_51
466.9
MONOCYTES_52
463.5
MONOCYTES_53
463.5
MONOCYTES_54
462.5
MONOCYTES_55
461.3
MONOCYTES_56
460.9
MONOCYTES_57
460.5
MONOCYTES_58
460.3
MONOCYTES_59
459.3
MONOCYTES_60
459.1
MONOCYTES_61
458.2
MONOCYTES_62
452.8
MONOCYTES_63
451.8
MONOCYTES_64
451.5
MONOCYTES_65
450.2
MONOCYTES_66
449.6
MONOCYTES_67
449.0
MONOCYTES_68
445.8
MONOCYTES_69
441.9
MONOCYTES_70
441.2
MONOCYTES_71
440.9
MONOCYTES_72
437.1
MONOCYTES_73
424.0
MONOCYTES_74
422.3
MONOCYTES_75
421.9
MONOCYTES_76
420.7
MONOCYTES_77
419.8
MONOCYTES_78
419.7
MONOCYTES_79
418.5
MONOCYTES_80
418.5
MONOCYTES_81
416.6
MONOCYTES_82
416.3
MONOCYTES_83
412.7
MONOCYTES_84
409.7
MONOCYTES_85
407.7
MONOCYTES_86
405.4
MONOCYTES_87
404.6
MONOCYTES_88
388.5
MONOCYTES_89
373.6
MONOCYTES_90
370.5
MONOCYTES_91
359.8
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Non-classical monocyte TPM: 437.1
Samples: 90
Max TPM: 651.4
Min TPM: 329.3
M2_1
651.4
M2_2
568.0
M2_3
560.2
M2_4
550.1
M2_5
545.0
M2_6
540.6
M2_7
539.8
M2_8
538.8
M2_9
531.6
M2_10
523.7
M2_11
501.2
M2_12
500.6
M2_13
499.6
M2_14
492.0
M2_15
489.6
M2_16
486.2
M2_17
485.4
M2_18
478.6
M2_19
474.3
M2_20
474.0
M2_21
472.5
M2_22
469.3
M2_23
464.2
M2_24
463.7
M2_25
462.7
M2_26
462.6
M2_27
462.2
M2_28
460.3
M2_29
458.1
M2_30
456.6
M2_31
456.5
M2_32
455.2
M2_33
454.5
M2_34
451.9
M2_35
451.6
M2_36
451.4
M2_37
450.9
M2_38
450.2
M2_39
449.5
M2_40
445.7
M2_41
445.4
M2_42
441.7
M2_43
441.3
M2_44
439.2
M2_45
438.3
M2_46
433.9
M2_47
429.7
M2_48
428.4
M2_49
426.7
M2_50
424.9
M2_51
423.3
M2_52
422.7
M2_53
422.4
M2_54
420.9
M2_55
419.9
M2_56
418.4
M2_57
417.6
M2_58
416.7
M2_59
413.7
M2_60
413.3
M2_61
413.2
M2_62
410.2
M2_63
409.0
M2_64
406.6
M2_65
401.7
M2_66
400.0
M2_67
397.1
M2_68
394.4
M2_69
392.8
M2_70
392.8
M2_71
380.2
M2_72
379.4
M2_73
377.7
M2_74
375.3
M2_75
369.1
M2_76
368.3
M2_77
367.2
M2_78
366.6
M2_79
366.1
M2_80
364.3
M2_81
363.8
M2_82
359.3
M2_83
358.2
M2_84
352.1
M2_85
350.5
M2_86
345.5
M2_87
344.6
M2_88
342.5
M2_89
342.0
M2_90
329.3
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