A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
808.6
nTPM
Monaco:
96.8
nTPM
Schmiedel:
656.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
808.6
HPA sample
nTPM
NK-cell nTPM: 808.6
Samples: 6
Max nTPM: 1051.1
Min nTPM: 662.8
P10809_1013
662.8
P10809_1033
1051.1
P10809_1052
715.8
P10809_1071
929.7
P10809_1093
683.3
P10809_1103
808.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.8
Monaco sample
nTPM
NK-cell nTPM: 96.8
Samples: 4
Max nTPM: 115.7
Min nTPM: 81.3
RHH5316_R3683
81.3
RHH5224_R3596
115.7
RHH5253_R3625
88.3
RHH5282_R3654
102.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
656.6
Schmiedel sample id
TPM
NK-cell TPM: 656.6
Samples: 90
Max TPM: 850.5
Min TPM: 481.1
NK_1
850.5
NK_2
829.1
NK_3
828.0
NK_4
822.9
NK_5
809.6
NK_6
801.7
NK_7
794.6
NK_8
792.9
NK_9
786.2
NK_10
781.9
NK_11
772.3
NK_12
766.3
NK_13
762.0
NK_14
757.2
NK_15
752.9
NK_16
751.0
NK_17
750.8
NK_18
747.5
NK_19
737.1
NK_20
736.2
NK_21
725.9
NK_22
724.2
NK_23
723.8
NK_24
719.6
NK_25
714.1
NK_26
713.6
NK_27
711.5
NK_28
711.2
NK_29
710.8
NK_30
709.6
NK_31
708.0
NK_32
704.6
NK_33
702.1
NK_34
697.4
NK_35
684.3
NK_36
675.8
NK_37
674.0
NK_38
672.2
NK_39
668.5
NK_40
666.2
NK_41
664.8
NK_42
662.7
NK_43
662.7
NK_44
659.6
NK_45
656.7
NK_46
643.7
NK_47
643.0
NK_48
641.1
NK_49
638.7
NK_50
637.8
NK_51
635.5
NK_52
632.9
NK_53
632.9
NK_54
630.8
NK_55
624.0
NK_56
621.7
NK_57
615.2
NK_58
607.8
NK_59
605.4
NK_60
602.9
NK_61
597.9
NK_62
597.4
NK_63
597.2
NK_64
589.2
NK_65
587.7
NK_66
586.7
NK_67
586.1
NK_68
580.2
NK_69
579.8
NK_70
577.1
NK_71
575.1
NK_72
566.0
NK_73
565.5
NK_74
559.5
NK_75
558.5
NK_76
558.3
NK_77
554.1
NK_78
554.0
NK_79
549.6
NK_80
549.2
NK_81
549.0
NK_82
544.1
NK_83
542.1
NK_84
540.0
NK_85
539.7
NK_86
532.8
NK_87
515.8
NK_88
512.0
NK_89
501.2
NK_90
481.1
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