HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.8 nTPM
HPA Brain:30.6 nTPM
GTEx:23.8 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:64.1 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 30.6
Sample id Sample description nTPM
Hippocampus
nTPM: 28.7
2148 Female, age 91, left hemisphere 32.1
1898 Male, age 80, left hemisphere 30.9
2621 Female, age 67, right hemisphere 30.6
2529 Female, age 94, left hemisphere 29.5
1855 Male, age 76, left hemisphere 26.4
1911 Female, age 85, right hemisphere 23.0
Dentate gyrus
nTPM: 28.3
2531 Female, age 67, both hemispheres 30.7
1927 Female, age 91, both hemispheres 30.0
2010 Male, age 76, both hemispheres 28.9
2530 Female, age 94, left hemisphere 28.7
2528 Male, age 74, both hemispheres 27.8
2246 Female, age 85, both hemispheres 23.7
Entorhinal gyrus
nTPM: 29.7
2764 Male, age 80, right hemisphere 34.2
1787 Male, age 76, left hemisphere 32.0
2613 Female, age 94, left hemisphere 30.7
2686 Male, age 75, right hemisphere 29.5
1938 Female, age 85, left hemisphere 27.2
2117 Female, age 91, right hemisphere 24.6
Hippocampus, CA1
nTPM: 27.5
2749 Male, age 80, left hemisphere 35.4
2082 Female, age 91, right hemisphere 27.0
2527 Male, age 74, both hemispheres 26.2
1873 Female, age 85, both hemispheres 24.8
2045 Male, age 76, both hemispheres 24.5
Hippocampus, CA2
nTPM: 27.0
1892 Male, age 76, both hemispheres 33.5
2437 Female, age 94, left hemisphere 29.1
1963 Male, age 80, left hemisphere 29.0
2249 Male, age 74, both hemispheres 24.3
2113 Female, age 91, right hemisphere 24.1
1940 Female, age 85, left hemisphere 22.3
Hippocampus, CA3
nTPM: 30.6
2861 Female, age 67, both hemispheres 38.9
2620 Female, age 94, left hemisphere 35.7
1867 Male, age 76, both hemispheres 31.0
2137 Male, age 80, left hemisphere 28.5
2436 Male, age 74, both hemispheres 26.9
1891 Female, age 85, both hemispheres 22.5
Parahippocampal cortex
nTPM: 28.6
2622 Female, age 67, right hemisphere 35.8
1990 Female, age 91, right hemisphere 30.6
2250 Female, age 67, right hemisphere 29.2
2245 Female, age 91, both hemispheres 28.9
2692 Male, age 74, both hemispheres 27.5
1933 Female, age 85, both hemispheres 27.2
2018 Male, age 76, both hemispheres 26.7
2532 Female, age 72, left hemisphere 26.7
2693 Female, age 94, both hemispheres 26.7
1850 Male, age 80, both hemispheres 26.5
Perirhinal gyrus
nTPM: 27.9
1847 Female, age 91, left hemisphere 31.7
1794 Male, age 80, right hemisphere 31.6
2521 Female, age 94, right hemisphere 27.1
2848 Male, age 76, right hemisphere 24.5
1841 Female, age 85, right hemisphere 24.4
Subiculum
nTPM: 25.7
2619 Male, age 74, both hemispheres 30.1
1977 Female, age 85, both hemispheres 27.8
2438 Female, age 94, left hemisphere 26.8
2729 Female, age 91, right hemisphere 24.7
1901 Male, age 80, both hemispheres 24.0
2042 Male, age 76, both hemispheres 20.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 23.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.8
Samples: 255

Max nTPM: 60.2
Min nTPM: 6.2
Std nTPM: 8.1
Median nTPM: 23.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 60.2
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 44.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 43.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 41.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 40.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 39.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 39.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 39.2
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 38.6
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 38.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.2
FF:10169-103B7 60 years, female 10.3
FF:10153-102I9 76 years, female 8.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 39.1
Pig sample Sample description nTPM
Subiculum
nTPM: 34.4
Samples: 4

Max nTPM: 48.8
Min nTPM: 27.6
Sample A Female 48.8
Sample B Female 29.4
Sample C Male 31.6
Sample D Male 27.6
Dorsal hippocampus
nTPM: 36.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 24.6
Sample A Female 47.3
Sample B Female 39.1
Sample C Male 34.4
Sample D Male 24.6
Entorhinal cortex
nTPM: 39.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 30.4
Sample A Female 37.2
Sample B Female 41.5
Sample C Male 47.4
Sample D Male 30.4
Ventral hippocampus
nTPM: 38.0
Samples: 4

Max nTPM: 48.7
Min nTPM: 28.1
Sample A Female 41.2
Sample B Female 28.1
Sample C Male 48.7
Sample D Male 34.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 64.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 64.1
Samples: 4

Max nTPM: 65.8
Min nTPM: 62.0
Sample A Male 62.0
Sample B Male 62.8
Sample C Female 65.6
Sample D Female 65.8
Hippocampal formation
nTPM: 63.5
Samples: 4

Max nTPM: 69.5
Min nTPM: 57.6
Sample A Male 64.7
Sample B Male 57.6
Sample C Female 62.0
Sample D Female 69.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
69527818 Antisense, RP_050421_02_E06, Mouse strain C57BL/6J (56 days, male) 4.0
73635786 Antisense, RP_051017_04_D12, Mouse strain C57BL/6J (56 days, male) 2.8

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