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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2088.5
nTPM
HPA Brain:
1268.6
nTPM
GTEx:
2088.5
nTPM
FANTOM5:
857.9
Scaled Tags Per Million
Pig:
745.3
nTPM
Mouse:
1336.9
nTPM
Allen mouse:
12.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
1268.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1067.0
2586
Male, age 75, left hemisphere
1575.6
2828
Female, age 72, unknown
1370.9
2219
Male, age 76, both hemispheres
1066.3
1827
Male, age 72, unknown
1037.0
2666
Male, age 74, left hemisphere
1008.3
2411
Female, age 72, unknown
986.1
1833
Male, age 53, unknown
975.7
1870
Female, age 42, unknown
975.6
1830
Male, age 51, unknown
902.9
2019
Male, age 18, unknown
771.2
Dorsal raphe nucleus nTPM: 1265.0
2016
Female, age 72, unknown
1548.1
1828
Male, age 53, unknown
1342.1
2047
Male, age 72, unknown
1271.0
2298
Female, age 72, unknown
1152.3
2750
Male, age 76, both hemispheres
1011.3
Inferior colliculus nTPM: 1184.7
1890
Male, age 53, unknown
1276.5
2849
Male, age 72, unknown
1241.7
1848
Female, age 42, unknown
1215.3
2097
Female, age 72, unknown
1005.3
Median raphe nucleus nTPM: 927.7
2220
Male, age 76, midline
927.7
Periaquaductal grey, anterior nTPM: 1122.2
1795
Male, age 51, unknown
1150.4
2502
Female, age 75, unknown
1137.4
1947
Male, age 18, unknown
1078.9
Periaquaductal grey, dorsal nTPM: 1268.6
1840
Male, age 53, unknown
1545.3
2850
Male, age 76, both hemispheres
1388.8
2464
Female, age 72, unknown
1207.4
1831
Male, age 72, unknown
932.8
Periaquaductal grey, lateral nTPM: 1086.1
2053
Male, age 18, unknown
1263.1
2140
Male, age 76, both hemispheres
1208.3
2272
Male, age 74, both hemispheres
786.9
Pretectal area nTPM: 1132.4
2667
Female, age 75, unknown
1346.8
1817
Female, age 42, unknown
1246.0
2316
Male, age 76, right hemisphere
1245.4
2825
Male, age 18, unknown
1185.5
1815
Male, age 53, unknown
1175.5
1944
Female, age 72, unknown
1141.0
1816
Male, age 51, unknown
1121.3
2224
Female, age 72, unknown
1086.6
2407
Male, age 75, both hemispheres
992.0
2273
Male, age 74, both hemispheres
981.4
2007
Male, age 72, unknown
934.5
Red nucleus nTPM: 1182.2
2503
Female, age 72, unknown
1445.4
2769
Male, age 72, unknown
1400.9
2227
Male, age 72, unknown
1361.9
1904
Male, age 53, unknown
1264.8
1821
Female, age 72, unknown
1254.2
2588
Male, age 74, left hemisphere
1228.9
1954
Female, age 42, unknown
1208.6
2823
Male, age 76, right hemisphere
1165.7
1865
Male, age 51, unknown
1165.4
2725
Female, age 75, unknown
928.8
2584
Male, age 75, left hemisphere
924.6
2785
Male, age 18, unknown
837.5
Substantia nigra nTPM: 1248.8
2699
Male, age 18, unknown
1995.3
2665
Male, age 74, both hemispheres
1394.8
1851
Male, age 51, unknown
1336.6
1916
Female, age 42, unknown
1310.0
2241
Male, age 72, unknown
1183.1
1889
Female, age 72, unknown
1180.7
2409
Female, age 72, unknown
1130.7
2583
Male, age 75, right hemisphere
1123.6
2590
Female, age 75, unknown
1032.0
1941
Male, age 53, unknown
800.8
Superior colliculus nTPM: 1152.8
2668
Female, age 75, unknown
1401.5
1995
Male, age 72, unknown
1280.6
2664
Male, age 75, both hemispheres
1242.2
2087
Female, age 72, unknown
1138.8
1839
Male, age 51, unknown
1119.3
1796
Male, age 53, unknown
1117.6
2261
Male, age 18, unknown
1099.2
1895
Male, age 76, right hemisphere
1063.0
1913
Female, age 42, unknown
1059.2
2587
Male, age 74, left hemisphere
1006.6
Ventral tegmental area nTPM: 1059.5
2410
Female, age 72, unknown
1246.3
1915
Female, age 42, unknown
1151.4
1942
Male, age 51, unknown
1111.8
2021
Male, age 53, unknown
1078.2
2218
Male, age 76, both hemispheres
990.2
2223
Female, age 72, unknown
779.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
2088.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2088.5
Samples: 139
Max nTPM: 4521.1
Min nTPM: 430.6
Std nTPM: 861.6
Median nTPM: 1981.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
4521.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4211.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4121.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4108.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4030.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3897.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3877.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3576.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3542.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3530.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3526.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3496.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
3465.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
3364.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3364.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3291.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3274.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3214.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
3161.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3078.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2986.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2949.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2905.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2892.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2876.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2869.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2764.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2732.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2726.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2704.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
2678.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
2615.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2607.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2602.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2589.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2576.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2573.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2518.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2505.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2500.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2484.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2482.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2468.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2433.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2411.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2406.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2390.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2357.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2313.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2299.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2296.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2292.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2289.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2193.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2178.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2167.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2167.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2148.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2148.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2133.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2129.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2114.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2093.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2076.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2060.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2030.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2012.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2012.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2006.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1981.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1967.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1967.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1961.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1955.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1955.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1954.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1917.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1856.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1850.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1849.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1785.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1782.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1777.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1767.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1762.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1760.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1753.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1728.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1727.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1725.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1663.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1662.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1659.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1646.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1579.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1570.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1569.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1548.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1530.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1527.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1522.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1514.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1453.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1428.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1426.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1420.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1420.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1410.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1405.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1391.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1378.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1339.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1330.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1325.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1263.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1255.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1250.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1238.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1225.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1221.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1190.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1146.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1118.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1085.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1082.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1079.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1054.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
1028.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1023.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
987.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
975.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
929.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
884.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
717.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
603.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
530.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
518.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
517.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
430.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1336.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1336.9
Samples: 4
Max nTPM: 1413.4
Min nTPM: 1243.0
Sample A
Male
1413.4
Sample B
Male
1243.0
Sample C
Female
1292.5
Sample D
Female
1398.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.