MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2060.1 nTPM
HPA Brain:1268.6 nTPM
GTEx:2060.1 nTPM
FANTOM5:857.9 Scaled Tags Per Million
Pig:745.3 nTPM
Mouse:1336.9 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1268.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1067.0
2586 Male, age 75, left hemisphere 1575.6
2828 Female, age 72, unknown 1370.9
2219 Male, age 76, both hemispheres 1066.3
1827 Male, age 72, unknown 1037.0
2666 Male, age 74, left hemisphere 1008.3
2411 Female, age 72, unknown 986.1
1833 Male, age 53, unknown 975.7
1870 Female, age 42, unknown 975.6
1830 Male, age 51, unknown 902.9
2019 Male, age 18, unknown 771.2
Dorsal raphe nucleus
nTPM: 1265.0
2016 Female, age 72, unknown 1548.1
1828 Male, age 53, unknown 1342.1
2047 Male, age 72, unknown 1271.0
2298 Female, age 72, unknown 1152.3
2750 Male, age 76, both hemispheres 1011.3
Inferior colliculus
nTPM: 1184.7
1890 Male, age 53, unknown 1276.5
2849 Male, age 72, unknown 1241.7
1848 Female, age 42, unknown 1215.3
2097 Female, age 72, unknown 1005.3
Median raphe nucleus
nTPM: 927.7
2220 Male, age 76, midline 927.7
Periaquaductal grey, anterior
nTPM: 1122.2
1795 Male, age 51, unknown 1150.4
2502 Female, age 75, unknown 1137.4
1947 Male, age 18, unknown 1078.9
Periaquaductal grey, dorsal
nTPM: 1268.6
1840 Male, age 53, unknown 1545.3
2850 Male, age 76, both hemispheres 1388.8
2464 Female, age 72, unknown 1207.4
1831 Male, age 72, unknown 932.8
Periaquaductal grey, lateral
nTPM: 1086.1
2053 Male, age 18, unknown 1263.1
2140 Male, age 76, both hemispheres 1208.3
2272 Male, age 74, both hemispheres 786.9
Pretectal area
nTPM: 1132.4
2667 Female, age 75, unknown 1346.8
1817 Female, age 42, unknown 1246.0
2316 Male, age 76, right hemisphere 1245.4
2825 Male, age 18, unknown 1185.5
1815 Male, age 53, unknown 1175.5
1944 Female, age 72, unknown 1141.0
1816 Male, age 51, unknown 1121.3
2224 Female, age 72, unknown 1086.6
2407 Male, age 75, both hemispheres 992.0
2273 Male, age 74, both hemispheres 981.4
2007 Male, age 72, unknown 934.5
Red nucleus
nTPM: 1182.2
2503 Female, age 72, unknown 1445.4
2769 Male, age 72, unknown 1400.9
2227 Male, age 72, unknown 1361.9
1904 Male, age 53, unknown 1264.8
1821 Female, age 72, unknown 1254.2
2588 Male, age 74, left hemisphere 1228.9
1954 Female, age 42, unknown 1208.6
2823 Male, age 76, right hemisphere 1165.7
1865 Male, age 51, unknown 1165.4
2725 Female, age 75, unknown 928.8
2584 Male, age 75, left hemisphere 924.6
2785 Male, age 18, unknown 837.5
Substantia nigra
nTPM: 1248.8
2699 Male, age 18, unknown 1995.3
2665 Male, age 74, both hemispheres 1394.8
1851 Male, age 51, unknown 1336.6
1916 Female, age 42, unknown 1310.0
2241 Male, age 72, unknown 1183.1
1889 Female, age 72, unknown 1180.7
2409 Female, age 72, unknown 1130.7
2583 Male, age 75, right hemisphere 1123.6
2590 Female, age 75, unknown 1032.0
1941 Male, age 53, unknown 800.8
Superior colliculus
nTPM: 1152.8
2668 Female, age 75, unknown 1401.5
1995 Male, age 72, unknown 1280.6
2664 Male, age 75, both hemispheres 1242.2
2087 Female, age 72, unknown 1138.8
1839 Male, age 51, unknown 1119.3
1796 Male, age 53, unknown 1117.6
2261 Male, age 18, unknown 1099.2
1895 Male, age 76, right hemisphere 1063.0
1913 Female, age 42, unknown 1059.2
2587 Male, age 74, left hemisphere 1006.6
Ventral tegmental area
nTPM: 1059.5
2410 Female, age 72, unknown 1246.3
1915 Female, age 42, unknown 1151.4
1942 Male, age 51, unknown 1111.8
2021 Male, age 53, unknown 1078.2
2218 Male, age 76, both hemispheres 990.2
2223 Female, age 72, unknown 779.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2060.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2060.1
Samples: 183

Max nTPM: 5683.0
Min nTPM: 119.8
Std nTPM: 882.6
Median nTPM: 1975.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 5683.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 5124.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4260.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4014.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3966.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 3944.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 3889.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3754.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 3739.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 3734.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3427.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 857.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 857.9
FF:10158-103A5 76 years, female 857.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 745.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 730.2
Samples: 4

Max nTPM: 860.1
Min nTPM: 594.2
Sample A Female 860.1
Sample B Female 594.2
Sample C Male 704.0
Sample D Male 762.5
Midbrain
nTPM: 723.3
Samples: 4

Max nTPM: 922.8
Min nTPM: 563.7
Sample A Female 725.1
Sample B Female 922.8
Sample C Male 681.7
Sample D Male 563.7
Periaqueductal gray
nTPM: 745.3
Samples: 3

Max nTPM: 855.3
Min nTPM: 624.5
Sample B Female 855.3
Sample C Male 756.2
Sample D Male 624.5
Superior colliculi
nTPM: 696.2
Samples: 4

Max nTPM: 933.3
Min nTPM: 448.1
Sample A Female 933.3
Sample B Female 448.1
Sample C Male 688.5
Sample D Male 715.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1336.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1336.9
Samples: 4

Max nTPM: 1413.4
Min nTPM: 1243.0
Sample A Male 1413.4
Sample B Male 1243.0
Sample C Female 1292.5
Sample D Female 1398.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 15.5
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 11.3
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 10.3
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 6.8

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