A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.3
nTPM
Monaco:
33.6
nTPM
Schmiedel:
48.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
HPA sample
nTPM
Memory B-cell nTPM: 9.3
Samples: 6
Max nTPM: 11.3
Min nTPM: 6.2
P10809_1017
6.2
P10809_1025
7.9
P10809_1044
10.4
P10809_1063
11.0
P10809_1092
8.9
P10809_1105
11.3
Naive B-cell nTPM: 8.6
Samples: 6
Max nTPM: 11.5
Min nTPM: 7.0
P10809_1011
7.4
P10809_1029
7.7
P10809_1048
11.5
P10809_1067
8.5
P10809_1091
9.5
P10809_1104
7.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 30.6
Samples: 4
Max nTPM: 36.4
Min nTPM: 26.2
RHH5310_R3677
29.5
RHH5218_R3590
30.4
RHH5247_R3619
26.2
RHH5276_R3648
36.4
Naive B-cell nTPM: 30.0
Samples: 4
Max nTPM: 39.0
Min nTPM: 25.1
RHH5308_R3675
25.1
RHH5216_R3588
27.0
RHH5245_R3617
39.0
RHH5274_R3646
29.1
Non-switched memory B-cell nTPM: 31.6
Samples: 4
Max nTPM: 38.6
Min nTPM: 23.2
RHH5309_R3676
23.2
RHH5217_R3589
33.6
RHH5246_R3618
38.6
RHH5275_R3647
31.0
Plasmablast nTPM: 33.6
Samples: 4
Max nTPM: 42.8
Min nTPM: 22.1
RHH5312_R3679
36.9
RHH5220_R3592
42.8
RHH5249_R3621
22.1
RHH5278_R3650
32.6
Switched memory B-cell nTPM: 32.4
Samples: 4
Max nTPM: 34.7
Min nTPM: 27.9
RHH5311_R3678
34.7
RHH5219_R3591
32.6
RHH5248_R3620
34.2
RHH5277_R3649
27.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.9
Schmiedel sample id
TPM
Naive B-cell TPM: 48.9
Samples: 91
Max TPM: 72.4
Min TPM: 34.6
B_CELL_NAIVE_1
72.4
B_CELL_NAIVE_2
71.3
B_CELL_NAIVE_3
64.9
B_CELL_NAIVE_4
64.1
B_CELL_NAIVE_5
62.5
B_CELL_NAIVE_6
59.1
B_CELL_NAIVE_7
58.9
B_CELL_NAIVE_8
57.9
B_CELL_NAIVE_9
57.3
B_CELL_NAIVE_10
56.9
B_CELL_NAIVE_11
56.8
B_CELL_NAIVE_12
56.6
B_CELL_NAIVE_13
56.3
B_CELL_NAIVE_14
55.7
B_CELL_NAIVE_15
55.0
B_CELL_NAIVE_16
54.7
B_CELL_NAIVE_17
54.4
B_CELL_NAIVE_18
54.1
B_CELL_NAIVE_19
53.9
B_CELL_NAIVE_20
53.6
B_CELL_NAIVE_21
53.1
B_CELL_NAIVE_22
52.9
B_CELL_NAIVE_23
52.6
B_CELL_NAIVE_24
52.2
B_CELL_NAIVE_25
52.1
B_CELL_NAIVE_26
51.8
B_CELL_NAIVE_27
51.6
B_CELL_NAIVE_28
51.5
B_CELL_NAIVE_29
51.1
B_CELL_NAIVE_30
50.9
B_CELL_NAIVE_31
50.3
B_CELL_NAIVE_32
50.1
B_CELL_NAIVE_33
49.9
B_CELL_NAIVE_34
49.6
B_CELL_NAIVE_35
49.5
B_CELL_NAIVE_36
49.5
B_CELL_NAIVE_37
49.3
B_CELL_NAIVE_38
49.1
B_CELL_NAIVE_39
48.8
B_CELL_NAIVE_40
48.7
B_CELL_NAIVE_41
48.7
B_CELL_NAIVE_42
48.6
B_CELL_NAIVE_43
48.4
B_CELL_NAIVE_44
48.2
B_CELL_NAIVE_45
48.1
B_CELL_NAIVE_46
48.1
B_CELL_NAIVE_47
48.0
B_CELL_NAIVE_48
48.0
B_CELL_NAIVE_49
47.9
B_CELL_NAIVE_50
47.8
B_CELL_NAIVE_51
47.7
B_CELL_NAIVE_52
47.7
B_CELL_NAIVE_53
47.5
B_CELL_NAIVE_54
46.8
B_CELL_NAIVE_55
46.8
B_CELL_NAIVE_56
46.7
B_CELL_NAIVE_57
46.5
B_CELL_NAIVE_58
46.4
B_CELL_NAIVE_59
46.1
B_CELL_NAIVE_60
46.1
B_CELL_NAIVE_61
46.0
B_CELL_NAIVE_62
45.9
B_CELL_NAIVE_63
45.9
B_CELL_NAIVE_64
45.7
B_CELL_NAIVE_65
45.3
B_CELL_NAIVE_66
45.2
B_CELL_NAIVE_67
45.2
B_CELL_NAIVE_68
45.1
B_CELL_NAIVE_69
45.1
B_CELL_NAIVE_70
44.3
B_CELL_NAIVE_71
44.1
B_CELL_NAIVE_72
44.1
B_CELL_NAIVE_73
43.8
B_CELL_NAIVE_74
43.8
B_CELL_NAIVE_75
43.6
B_CELL_NAIVE_76
43.0
B_CELL_NAIVE_77
42.8
B_CELL_NAIVE_78
42.6
B_CELL_NAIVE_79
42.2
B_CELL_NAIVE_80
41.8
B_CELL_NAIVE_81
41.4
B_CELL_NAIVE_82
41.4
B_CELL_NAIVE_83
40.6
B_CELL_NAIVE_84
40.2
B_CELL_NAIVE_85
40.0
B_CELL_NAIVE_86
39.2
B_CELL_NAIVE_87
38.5
B_CELL_NAIVE_88
37.2
B_CELL_NAIVE_89
36.4
B_CELL_NAIVE_90
34.9
B_CELL_NAIVE_91
34.6
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The Human Protein Atlas project is funded
