A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.5
nTPM
Monaco:
34.8
nTPM
Schmiedel:
57.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
HPA sample
nTPM
NK-cell nTPM: 10.5
Samples: 6
Max nTPM: 19.2
Min nTPM: 1.6
P10809_1013
6.3
P10809_1033
9.9
P10809_1052
19.2
P10809_1071
13.6
P10809_1093
1.6
P10809_1103
12.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.8
Monaco sample
nTPM
NK-cell nTPM: 34.8
Samples: 4
Max nTPM: 42.9
Min nTPM: 26.8
RHH5316_R3683
42.9
RHH5224_R3596
33.2
RHH5253_R3625
36.4
RHH5282_R3654
26.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.3
Schmiedel sample id
TPM
NK-cell TPM: 57.3
Samples: 90
Max TPM: 80.5
Min TPM: 39.6
NK_1
80.5
NK_2
77.4
NK_3
76.1
NK_4
72.7
NK_5
71.0
NK_6
69.4
NK_7
69.4
NK_8
68.7
NK_9
68.2
NK_10
68.0
NK_11
66.5
NK_12
66.2
NK_13
65.9
NK_14
65.1
NK_15
64.8
NK_16
64.3
NK_17
63.9
NK_18
63.3
NK_19
63.3
NK_20
62.8
NK_21
62.6
NK_22
62.5
NK_23
62.5
NK_24
62.2
NK_25
62.1
NK_26
62.0
NK_27
61.9
NK_28
61.2
NK_29
61.1
NK_30
61.0
NK_31
60.9
NK_32
60.6
NK_33
60.5
NK_34
60.4
NK_35
60.2
NK_36
58.8
NK_37
57.6
NK_38
57.2
NK_39
57.1
NK_40
57.1
NK_41
57.0
NK_42
56.8
NK_43
56.6
NK_44
56.2
NK_45
56.2
NK_46
55.9
NK_47
55.8
NK_48
55.8
NK_49
55.8
NK_50
55.7
NK_51
55.2
NK_52
54.9
NK_53
54.7
NK_54
54.5
NK_55
54.5
NK_56
54.5
NK_57
54.3
NK_58
54.1
NK_59
54.0
NK_60
53.9
NK_61
53.5
NK_62
52.8
NK_63
52.8
NK_64
52.6
NK_65
52.6
NK_66
52.6
NK_67
52.5
NK_68
52.3
NK_69
51.6
NK_70
51.4
NK_71
51.4
NK_72
50.8
NK_73
50.7
NK_74
50.7
NK_75
50.5
NK_76
48.9
NK_77
48.2
NK_78
48.2
NK_79
48.1
NK_80
48.1
NK_81
47.9
NK_82
47.8
NK_83
47.3
NK_84
47.0
NK_85
46.5
NK_86
46.2
NK_87
44.3
NK_88
44.3
NK_89
44.0
NK_90
39.6
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