A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
41.4
nTPM
Schmiedel:
57.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
Classical monocyte nTPM: 6.3
Samples: 6
Max nTPM: 7.7
Min nTPM: 4.9
P10809_1003
5.7
P10809_1020
6.6
P10809_1039
7.7
P10809_1058
7.4
P10809_1080
5.8
P10809_1107
4.9
Intermediate monocyte nTPM: 8.8
Samples: 6
Max nTPM: 11.2
Min nTPM: 6.5
P10809_1004
11.2
P10809_1023
8.3
P10809_1042
8.8
P10809_1061
10.3
P10809_1081
7.6
P10809_1108
6.5
Non-classical monocyte nTPM: 13.5
Samples: 5
Max nTPM: 30.0
Min nTPM: 8.3
P10809_1005
10.0
P10809_1053
9.7
P10809_1072
30.0
P10809_1082
9.3
P10809_1109
8.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.4
Monaco sample
nTPM
Classical monocyte nTPM: 27.5
Samples: 4
Max nTPM: 32.2
Min nTPM: 21.5
RHH5313_R3680
29.7
RHH5221_R3593
26.6
RHH5250_R3622
32.2
RHH5279_R3651
21.5
Intermediate monocyte nTPM: 32.7
Samples: 4
Max nTPM: 37.1
Min nTPM: 26.7
RHH5314_R3681
26.7
RHH5222_R3594
35.4
RHH5251_R3623
37.1
RHH5280_R3652
31.7
Non-classical monocyte nTPM: 41.3
Samples: 4
Max nTPM: 42.3
Min nTPM: 40.5
RHH5315_R3682
41.4
RHH5223_R3595
41.2
RHH5252_R3624
40.5
RHH5281_R3653
42.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.5
Schmiedel sample id
TPM
Classical monocyte TPM: 34.3
Samples: 91
Max TPM: 44.8
Min TPM: 28.3
MONOCYTES_1
44.8
MONOCYTES_2
43.2
MONOCYTES_3
42.6
MONOCYTES_4
41.5
MONOCYTES_5
40.9
MONOCYTES_6
40.4
MONOCYTES_7
39.8
MONOCYTES_8
39.4
MONOCYTES_9
38.7
MONOCYTES_10
38.7
MONOCYTES_11
38.6
MONOCYTES_12
38.4
MONOCYTES_13
38.2
MONOCYTES_14
38.2
MONOCYTES_15
38.1
MONOCYTES_16
38.0
MONOCYTES_17
37.9
MONOCYTES_18
37.8
MONOCYTES_19
37.6
MONOCYTES_20
37.6
MONOCYTES_21
37.4
MONOCYTES_22
37.4
MONOCYTES_23
37.4
MONOCYTES_24
37.2
MONOCYTES_25
37.2
MONOCYTES_26
36.4
MONOCYTES_27
36.4
MONOCYTES_28
36.0
MONOCYTES_29
35.8
MONOCYTES_30
35.8
MONOCYTES_31
35.7
MONOCYTES_32
35.6
MONOCYTES_33
35.2
MONOCYTES_34
35.1
MONOCYTES_35
35.0
MONOCYTES_36
34.9
MONOCYTES_37
34.8
MONOCYTES_38
34.7
MONOCYTES_39
34.7
MONOCYTES_40
34.4
MONOCYTES_41
34.4
MONOCYTES_42
34.2
MONOCYTES_43
33.8
MONOCYTES_44
33.8
MONOCYTES_45
33.8
MONOCYTES_46
33.7
MONOCYTES_47
33.7
MONOCYTES_48
33.6
MONOCYTES_49
33.4
MONOCYTES_50
33.3
MONOCYTES_51
33.3
MONOCYTES_52
33.3
MONOCYTES_53
33.1
MONOCYTES_54
33.0
MONOCYTES_55
33.0
MONOCYTES_56
32.9
MONOCYTES_57
32.8
MONOCYTES_58
32.7
MONOCYTES_59
32.5
MONOCYTES_60
32.4
MONOCYTES_61
32.4
MONOCYTES_62
32.0
MONOCYTES_63
31.9
MONOCYTES_64
31.8
MONOCYTES_65
31.6
MONOCYTES_66
31.5
MONOCYTES_67
31.4
MONOCYTES_68
31.0
MONOCYTES_69
31.0
MONOCYTES_70
30.9
MONOCYTES_71
30.8
MONOCYTES_72
30.7
MONOCYTES_73
30.6
MONOCYTES_74
30.5
MONOCYTES_75
30.5
MONOCYTES_76
30.4
MONOCYTES_77
30.3
MONOCYTES_78
30.3
MONOCYTES_79
30.2
MONOCYTES_80
30.1
MONOCYTES_81
29.9
MONOCYTES_82
29.9
MONOCYTES_83
29.7
MONOCYTES_84
29.7
MONOCYTES_85
29.6
MONOCYTES_86
29.6
MONOCYTES_87
29.5
MONOCYTES_88
29.5
MONOCYTES_89
29.1
MONOCYTES_90
29.1
MONOCYTES_91
28.3
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Non-classical monocyte TPM: 57.5
Samples: 90
Max TPM: 83.4
Min TPM: 41.3
M2_1
83.4
M2_2
80.4
M2_3
80.4
M2_4
75.4
M2_5
72.9
M2_6
72.3
M2_7
71.4
M2_8
71.2
M2_9
71.1
M2_10
70.5
M2_11
67.8
M2_12
66.8
M2_13
65.8
M2_14
65.8
M2_15
65.8
M2_16
65.7
M2_17
65.4
M2_18
64.8
M2_19
63.8
M2_20
63.7
M2_21
63.6
M2_22
63.1
M2_23
62.2
M2_24
62.1
M2_25
61.8
M2_26
61.8
M2_27
61.4
M2_28
61.0
M2_29
60.5
M2_30
60.5
M2_31
60.1
M2_32
59.8
M2_33
59.6
M2_34
59.3
M2_35
59.2
M2_36
59.2
M2_37
58.0
M2_38
57.9
M2_39
57.6
M2_40
57.3
M2_41
57.1
M2_42
57.0
M2_43
57.0
M2_44
56.4
M2_45
56.3
M2_46
56.2
M2_47
56.1
M2_48
56.1
M2_49
55.6
M2_50
55.1
M2_51
54.9
M2_52
54.7
M2_53
54.3
M2_54
54.3
M2_55
54.2
M2_56
53.7
M2_57
53.5
M2_58
53.5
M2_59
53.1
M2_60
53.1
M2_61
53.0
M2_62
52.9
M2_63
52.8
M2_64
52.2
M2_65
52.0
M2_66
51.7
M2_67
51.6
M2_68
51.3
M2_69
51.0
M2_70
50.7
M2_71
50.2
M2_72
49.7
M2_73
49.5
M2_74
49.2
M2_75
49.2
M2_76
49.0
M2_77
48.4
M2_78
48.3
M2_79
47.8
M2_80
47.7
M2_81
47.1
M2_82
46.6
M2_83
46.2
M2_84
46.1
M2_85
46.1
M2_86
45.5
M2_87
45.5
M2_88
44.7
M2_89
44.2
M2_90
41.3
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