On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
868.4
nTPM
HPA Brain:
1026.3
nTPM
GTEx:
868.4
nTPM
FANTOM5:
1397.5
Scaled Tags Per Million
Mouse:
1386.7
nTPM
Rat:
985.0
nTPM
Pig:
941.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1026.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 787.7
2019
Male, age 18, unknown
1302.0
2828
Female, age 72, unknown
1012.7
2586
Male, age 75, left hemisphere
989.3
1827
Male, age 72, unknown
785.0
2219
Male, age 76, both hemispheres
772.9
2411
Female, age 72, unknown
645.8
1870
Female, age 42, unknown
631.1
1833
Male, age 53, unknown
621.6
1830
Male, age 51, unknown
604.8
2666
Male, age 74, left hemisphere
511.2
Dorsal raphe nucleus nTPM: 860.4
2298
Female, age 72, unknown
1003.8
1828
Male, age 53, unknown
1000.4
2047
Male, age 72, unknown
824.3
2016
Female, age 72, unknown
796.2
2750
Male, age 76, both hemispheres
677.5
Inferior colliculus nTPM: 896.4
2097
Female, age 72, unknown
1086.3
1890
Male, age 53, unknown
1004.1
1848
Female, age 42, unknown
817.9
2849
Male, age 72, unknown
677.4
Median raphe nucleus nTPM: 588.7
2220
Male, age 76, midline
588.7
Periaquaductal grey, anterior nTPM: 837.0
1795
Male, age 51, unknown
890.1
2502
Female, age 75, unknown
886.5
1947
Male, age 18, unknown
734.4
Periaquaductal grey, dorsal nTPM: 652.8
2850
Male, age 76, both hemispheres
673.0
2464
Female, age 72, unknown
663.3
1840
Male, age 53, unknown
656.9
1831
Male, age 72, unknown
617.8
Periaquaductal grey, lateral nTPM: 718.2
2272
Male, age 74, both hemispheres
873.2
2140
Male, age 76, both hemispheres
688.7
2053
Male, age 18, unknown
592.6
Pretectal area nTPM: 1026.3
2667
Female, age 75, unknown
1319.4
2007
Male, age 72, unknown
1304.8
1944
Female, age 72, unknown
1276.9
1817
Female, age 42, unknown
1264.3
1816
Male, age 51, unknown
1218.7
2273
Male, age 74, both hemispheres
1173.7
1815
Male, age 53, unknown
960.0
2316
Male, age 76, right hemisphere
756.6
2407
Male, age 75, both hemispheres
741.8
2224
Female, age 72, unknown
712.8
2825
Male, age 18, unknown
560.0
Red nucleus nTPM: 913.8
2785
Male, age 18, unknown
1243.4
2503
Female, age 72, unknown
1032.8
1821
Female, age 72, unknown
1019.6
2227
Male, age 72, unknown
989.4
2769
Male, age 72, unknown
986.1
1954
Female, age 42, unknown
899.7
1904
Male, age 53, unknown
868.1
2823
Male, age 76, right hemisphere
857.7
1865
Male, age 51, unknown
857.2
2725
Female, age 75, unknown
834.6
2588
Male, age 74, left hemisphere
774.0
2584
Male, age 75, left hemisphere
603.5
Substantia nigra nTPM: 858.0
1916
Female, age 42, unknown
1165.7
1889
Female, age 72, unknown
1108.9
1851
Male, age 51, unknown
981.0
1941
Male, age 53, unknown
950.5
2583
Male, age 75, right hemisphere
838.8
2699
Male, age 18, unknown
784.4
2665
Male, age 74, both hemispheres
721.1
2241
Male, age 72, unknown
710.0
2590
Female, age 75, unknown
670.2
2409
Female, age 72, unknown
649.8
Superior colliculus nTPM: 853.8
2087
Female, age 72, unknown
1136.7
1796
Male, age 53, unknown
941.3
2664
Male, age 75, both hemispheres
922.7
2261
Male, age 18, unknown
913.0
1995
Male, age 72, unknown
861.8
2668
Female, age 75, unknown
804.6
2587
Male, age 74, left hemisphere
756.2
1913
Female, age 42, unknown
749.9
1839
Male, age 51, unknown
749.0
1895
Male, age 76, right hemisphere
702.7
Ventral tegmental area nTPM: 769.2
1915
Female, age 42, unknown
876.7
2410
Female, age 72, unknown
856.1
2218
Male, age 76, both hemispheres
841.9
1942
Male, age 51, unknown
735.1
2223
Female, age 72, unknown
722.5
2021
Male, age 53, unknown
583.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
868.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 868.4
Samples: 183
Max nTPM: 2690.7
Min nTPM: 160.8
Std nTPM: 322.6
Median nTPM: 827.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
2690.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1715.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1634.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1597.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1549.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1529.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1487.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1437.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1425.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1420.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1414.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1404.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1362.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1331.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1314.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1283.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1280.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1268.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1265.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1264.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1215.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1197.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1196.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1175.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1168.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1157.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1150.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1139.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1133.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1130.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1123.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1122.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1116.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1112.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1110.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1110.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1108.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1092.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1088.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1084.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1073.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1069.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1064.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1064.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1064.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1063.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1062.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1053.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1052.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1047.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1044.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1039.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1033.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1033.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1030.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1020.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1010.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1006.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1004.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1002.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1001.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
995.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
989.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
986.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
982.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
975.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
969.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
948.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
942.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
942.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
935.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
932.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
924.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
920.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
914.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
893.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
881.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
880.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
875.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
872.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
868.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
864.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
862.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
859.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
857.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
853.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
852.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
848.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
847.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
840.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
836.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
827.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
826.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
815.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
814.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
811.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
806.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
799.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
794.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
794.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
786.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
773.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
772.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
769.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
764.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
760.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
758.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
757.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
755.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
754.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
754.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
752.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
744.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
736.9
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
735.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
735.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
734.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
730.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
730.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
727.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
719.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
708.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
708.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
706.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
703.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
697.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
695.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
693.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
691.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
690.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
688.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
681.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
678.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
677.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
670.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
659.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
657.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
652.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
639.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
638.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
625.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
617.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
612.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
612.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
609.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
608.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
608.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
608.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
604.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
600.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
594.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
589.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
587.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
587.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
579.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
577.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
574.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
572.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
571.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
567.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
555.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
551.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
545.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
529.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
519.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
498.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
497.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
455.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
452.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
450.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
425.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
418.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
418.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
402.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
399.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
383.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
376.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
368.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
331.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
328.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
327.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
216.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
160.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
941.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 697.2
Samples: 3
Max nTPM: 883.2
Min nTPM: 489.0
Sample A
Female
883.2
Sample B
Female
489.0
Sample C
Male
719.3
Midbrain nTPM: 820.5
Samples: 3
Max nTPM: 940.3
Min nTPM: 639.7
Sample B
Female
639.7
Sample C
Male
881.4
Sample D
Male
940.3
Periaqueductal gray nTPM: 592.4
Samples: 3
Max nTPM: 693.4
Min nTPM: 459.1
Sample B
Female
624.6
Sample C
Male
693.4
Sample D
Male
459.1
Superior colliculi nTPM: 941.4
Samples: 4
Max nTPM: 1321.7
Min nTPM: 570.3
Sample A
Female
1321.7
Sample B
Female
570.3
Sample C
Male
1058.5
Sample D
Male
815.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1386.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1386.8
Samples: 4
Max nTPM: 1498.1
Min nTPM: 1305.0
Sample A
1404.9
Sample B
1498.1
Sample C
1305.0
Sample D
1339.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
985.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 985.0
Samples: 4
Max nTPM: 1035.4
Min nTPM: 948.9
Sample A
1035.4
Sample A
948.9
Sample A
993.2
Sample A
962.6
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The Human Protein Atlas project is funded
