A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
7.7
nTPM
Schmiedel:
45.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Memory B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1017
0.3
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.1
Naive B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1011
0.5
P10809_1029
0.1
P10809_1048
0.0
P10809_1067
0.1
P10809_1091
0.0
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.7
Samples: 4
Max nTPM: 10.3
Min nTPM: 3.5
RHH5310_R3677
3.5
RHH5218_R3590
10.3
RHH5247_R3619
3.9
RHH5276_R3648
5.0
Naive B-cell nTPM: 7.7
Samples: 4
Max nTPM: 8.4
Min nTPM: 6.9
RHH5308_R3675
7.7
RHH5216_R3588
6.9
RHH5245_R3617
8.4
RHH5274_R3646
7.6
Non-switched memory B-cell nTPM: 5.9
Samples: 4
Max nTPM: 9.3
Min nTPM: 3.8
RHH5309_R3676
3.8
RHH5217_R3589
4.7
RHH5246_R3618
5.6
RHH5275_R3647
9.3
Plasmablast nTPM: 4.8
Samples: 4
Max nTPM: 7.8
Min nTPM: 1.8
RHH5312_R3679
7.8
RHH5220_R3592
5.6
RHH5249_R3621
1.8
RHH5278_R3650
3.8
Switched memory B-cell nTPM: 7.0
Samples: 4
Max nTPM: 11.3
Min nTPM: 4.2
RHH5311_R3678
4.2
RHH5219_R3591
7.8
RHH5248_R3620
4.8
RHH5277_R3649
11.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
Schmiedel sample id
TPM
Naive B-cell TPM: 45.5
Samples: 91
Max TPM: 61.1
Min TPM: 28.2
B_CELL_NAIVE_1
61.1
B_CELL_NAIVE_2
60.0
B_CELL_NAIVE_3
59.1
B_CELL_NAIVE_4
58.2
B_CELL_NAIVE_5
56.7
B_CELL_NAIVE_6
56.5
B_CELL_NAIVE_7
54.0
B_CELL_NAIVE_8
53.6
B_CELL_NAIVE_9
53.6
B_CELL_NAIVE_10
53.4
B_CELL_NAIVE_11
52.5
B_CELL_NAIVE_12
52.0
B_CELL_NAIVE_13
51.7
B_CELL_NAIVE_14
51.4
B_CELL_NAIVE_15
51.3
B_CELL_NAIVE_16
51.1
B_CELL_NAIVE_17
51.0
B_CELL_NAIVE_18
50.9
B_CELL_NAIVE_19
50.5
B_CELL_NAIVE_20
50.2
B_CELL_NAIVE_21
50.1
B_CELL_NAIVE_22
50.0
B_CELL_NAIVE_23
49.7
B_CELL_NAIVE_24
49.7
B_CELL_NAIVE_25
49.6
B_CELL_NAIVE_26
49.6
B_CELL_NAIVE_27
49.4
B_CELL_NAIVE_28
49.4
B_CELL_NAIVE_29
49.4
B_CELL_NAIVE_30
49.3
B_CELL_NAIVE_31
49.1
B_CELL_NAIVE_32
49.1
B_CELL_NAIVE_33
48.2
B_CELL_NAIVE_34
48.2
B_CELL_NAIVE_35
48.1
B_CELL_NAIVE_36
48.1
B_CELL_NAIVE_37
47.9
B_CELL_NAIVE_38
47.2
B_CELL_NAIVE_39
47.1
B_CELL_NAIVE_40
46.7
B_CELL_NAIVE_41
46.7
B_CELL_NAIVE_42
46.6
B_CELL_NAIVE_43
45.9
B_CELL_NAIVE_44
45.9
B_CELL_NAIVE_45
45.8
B_CELL_NAIVE_46
45.8
B_CELL_NAIVE_47
45.6
B_CELL_NAIVE_48
45.4
B_CELL_NAIVE_49
45.0
B_CELL_NAIVE_50
45.0
B_CELL_NAIVE_51
45.0
B_CELL_NAIVE_52
44.7
B_CELL_NAIVE_53
44.4
B_CELL_NAIVE_54
43.5
B_CELL_NAIVE_55
43.4
B_CELL_NAIVE_56
43.3
B_CELL_NAIVE_57
43.2
B_CELL_NAIVE_58
42.8
B_CELL_NAIVE_59
42.6
B_CELL_NAIVE_60
42.5
B_CELL_NAIVE_61
42.5
B_CELL_NAIVE_62
42.3
B_CELL_NAIVE_63
42.1
B_CELL_NAIVE_64
42.1
B_CELL_NAIVE_65
42.0
B_CELL_NAIVE_66
41.5
B_CELL_NAIVE_67
40.9
B_CELL_NAIVE_68
40.7
B_CELL_NAIVE_69
40.4
B_CELL_NAIVE_70
40.0
B_CELL_NAIVE_71
39.9
B_CELL_NAIVE_72
39.8
B_CELL_NAIVE_73
39.8
B_CELL_NAIVE_74
39.5
B_CELL_NAIVE_75
39.3
B_CELL_NAIVE_76
38.8
B_CELL_NAIVE_77
38.3
B_CELL_NAIVE_78
37.6
B_CELL_NAIVE_79
37.6
B_CELL_NAIVE_80
37.5
B_CELL_NAIVE_81
37.5
B_CELL_NAIVE_82
37.5
B_CELL_NAIVE_83
37.3
B_CELL_NAIVE_84
36.6
B_CELL_NAIVE_85
36.4
B_CELL_NAIVE_86
36.0
B_CELL_NAIVE_87
35.9
B_CELL_NAIVE_88
34.7
B_CELL_NAIVE_89
34.5
B_CELL_NAIVE_90
34.2
B_CELL_NAIVE_91
28.2
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The Human Protein Atlas project is funded
