A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
7.0
nTPM
Schmiedel:
51.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1013
0.4
P10809_1033
0.0
P10809_1052
1.4
P10809_1071
0.2
P10809_1093
0.2
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
Monaco sample
nTPM
NK-cell nTPM: 7.1
Samples: 4
Max nTPM: 8.1
Min nTPM: 6.0
RHH5316_R3683
6.0
RHH5224_R3596
7.1
RHH5253_R3625
8.1
RHH5282_R3654
7.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.8
Schmiedel sample id
TPM
NK-cell TPM: 51.8
Samples: 90
Max TPM: 84.1
Min TPM: 19.2
NK_1
84.1
NK_2
66.7
NK_3
65.3
NK_4
64.5
NK_5
64.3
NK_6
64.1
NK_7
63.2
NK_8
62.2
NK_9
62.1
NK_10
61.3
NK_11
60.4
NK_12
59.1
NK_13
59.1
NK_14
58.5
NK_15
58.4
NK_16
58.4
NK_17
57.7
NK_18
57.6
NK_19
57.3
NK_20
57.3
NK_21
56.3
NK_22
56.3
NK_23
56.2
NK_24
56.0
NK_25
55.9
NK_26
55.5
NK_27
55.3
NK_28
55.2
NK_29
54.8
NK_30
54.8
NK_31
54.1
NK_32
54.0
NK_33
53.7
NK_34
53.6
NK_35
53.2
NK_36
53.1
NK_37
53.1
NK_38
52.9
NK_39
52.9
NK_40
52.7
NK_41
52.7
NK_42
52.7
NK_43
52.6
NK_44
52.5
NK_45
52.4
NK_46
51.9
NK_47
51.8
NK_48
51.7
NK_49
51.7
NK_50
51.7
NK_51
51.5
NK_52
51.3
NK_53
51.1
NK_54
50.6
NK_55
49.8
NK_56
49.4
NK_57
49.4
NK_58
49.1
NK_59
49.1
NK_60
48.8
NK_61
48.7
NK_62
48.4
NK_63
48.4
NK_64
48.1
NK_65
48.0
NK_66
47.9
NK_67
47.5
NK_68
47.2
NK_69
46.5
NK_70
46.4
NK_71
46.4
NK_72
46.3
NK_73
46.2
NK_74
45.9
NK_75
45.9
NK_76
45.2
NK_77
44.8
NK_78
44.2
NK_79
44.1
NK_80
43.3
NK_81
42.1
NK_82
41.6
NK_83
41.3
NK_84
41.1
NK_85
40.2
NK_86
39.1
NK_87
38.7
NK_88
37.5
NK_89
36.5
NK_90
19.2
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