A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
11.0
nTPM
Schmiedel:
58.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.3
P10809_1003
0.5
P10809_1020
1.1
P10809_1039
0.3
P10809_1058
0.5
P10809_1080
0.5
P10809_1107
0.4
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1004
0.5
P10809_1023
0.0
P10809_1042
0.4
P10809_1061
0.1
P10809_1081
0.3
P10809_1108
0.6
Non-classical monocyte nTPM: 0.3
Samples: 5
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1005
0.6
P10809_1053
0.3
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.0
Monaco sample
nTPM
Classical monocyte nTPM: 11.0
Samples: 4
Max nTPM: 15.3
Min nTPM: 6.2
RHH5313_R3680
10.9
RHH5221_R3593
6.2
RHH5250_R3622
11.6
RHH5279_R3651
15.3
Intermediate monocyte nTPM: 8.9
Samples: 4
Max nTPM: 12.6
Min nTPM: 5.7
RHH5314_R3681
8.9
RHH5222_R3594
5.7
RHH5251_R3623
12.6
RHH5280_R3652
8.4
Non-classical monocyte nTPM: 10.3
Samples: 4
Max nTPM: 13.7
Min nTPM: 7.9
RHH5315_R3682
10.8
RHH5223_R3595
13.7
RHH5252_R3624
8.6
RHH5281_R3653
7.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.3
Schmiedel sample id
TPM
Classical monocyte TPM: 39.7
Samples: 91
Max TPM: 54.0
Min TPM: 27.6
MONOCYTES_1
54.0
MONOCYTES_2
50.7
MONOCYTES_3
50.3
MONOCYTES_4
49.8
MONOCYTES_5
49.0
MONOCYTES_6
48.6
MONOCYTES_7
48.1
MONOCYTES_8
48.0
MONOCYTES_9
47.9
MONOCYTES_10
46.9
MONOCYTES_11
46.6
MONOCYTES_12
46.3
MONOCYTES_13
46.2
MONOCYTES_14
45.8
MONOCYTES_15
45.4
MONOCYTES_16
45.3
MONOCYTES_17
45.1
MONOCYTES_18
44.7
MONOCYTES_19
44.7
MONOCYTES_20
44.6
MONOCYTES_21
44.3
MONOCYTES_22
44.3
MONOCYTES_23
44.0
MONOCYTES_24
43.7
MONOCYTES_25
43.1
MONOCYTES_26
42.9
MONOCYTES_27
42.7
MONOCYTES_28
42.6
MONOCYTES_29
42.5
MONOCYTES_30
42.3
MONOCYTES_31
42.1
MONOCYTES_32
41.9
MONOCYTES_33
41.9
MONOCYTES_34
41.8
MONOCYTES_35
41.6
MONOCYTES_36
41.1
MONOCYTES_37
40.9
MONOCYTES_38
40.6
MONOCYTES_39
40.6
MONOCYTES_40
40.3
MONOCYTES_41
40.2
MONOCYTES_42
40.2
MONOCYTES_43
40.1
MONOCYTES_44
40.0
MONOCYTES_45
39.9
MONOCYTES_46
39.9
MONOCYTES_47
39.9
MONOCYTES_48
39.6
MONOCYTES_49
39.6
MONOCYTES_50
39.5
MONOCYTES_51
39.5
MONOCYTES_52
39.4
MONOCYTES_53
39.1
MONOCYTES_54
38.6
MONOCYTES_55
38.6
MONOCYTES_56
38.4
MONOCYTES_57
37.8
MONOCYTES_58
37.5
MONOCYTES_59
37.5
MONOCYTES_60
37.2
MONOCYTES_61
37.1
MONOCYTES_62
36.8
MONOCYTES_63
36.8
MONOCYTES_64
36.7
MONOCYTES_65
36.7
MONOCYTES_66
36.4
MONOCYTES_67
36.3
MONOCYTES_68
36.2
MONOCYTES_69
35.8
MONOCYTES_70
35.7
MONOCYTES_71
35.0
MONOCYTES_72
34.6
MONOCYTES_73
34.5
MONOCYTES_74
34.3
MONOCYTES_75
34.3
MONOCYTES_76
34.0
MONOCYTES_77
33.8
MONOCYTES_78
33.6
MONOCYTES_79
33.4
MONOCYTES_80
33.2
MONOCYTES_81
32.0
MONOCYTES_82
31.9
MONOCYTES_83
31.6
MONOCYTES_84
31.5
MONOCYTES_85
31.3
MONOCYTES_86
30.7
MONOCYTES_87
30.2
MONOCYTES_88
29.8
MONOCYTES_89
29.7
MONOCYTES_90
29.5
MONOCYTES_91
27.6
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Non-classical monocyte TPM: 58.3
Samples: 90
Max TPM: 84.4
Min TPM: 32.1
M2_1
84.4
M2_2
84.3
M2_3
82.6
M2_4
78.2
M2_5
76.2
M2_6
75.2
M2_7
71.8
M2_8
71.4
M2_9
70.1
M2_10
69.4
M2_11
69.3
M2_12
67.2
M2_13
67.1
M2_14
66.6
M2_15
66.1
M2_16
66.1
M2_17
66.0
M2_18
66.0
M2_19
65.9
M2_20
65.6
M2_21
65.6
M2_22
65.5
M2_23
64.8
M2_24
64.4
M2_25
64.3
M2_26
64.3
M2_27
64.0
M2_28
62.5
M2_29
62.3
M2_30
62.3
M2_31
61.7
M2_32
61.4
M2_33
61.2
M2_34
61.1
M2_35
60.8
M2_36
60.6
M2_37
60.1
M2_38
59.9
M2_39
59.9
M2_40
58.6
M2_41
58.3
M2_42
58.1
M2_43
58.0
M2_44
57.8
M2_45
57.7
M2_46
57.7
M2_47
57.0
M2_48
56.6
M2_49
56.4
M2_50
56.1
M2_51
55.9
M2_52
55.9
M2_53
55.9
M2_54
55.9
M2_55
55.9
M2_56
55.4
M2_57
55.4
M2_58
53.7
M2_59
53.5
M2_60
53.4
M2_61
53.2
M2_62
53.1
M2_63
52.8
M2_64
52.6
M2_65
52.5
M2_66
52.5
M2_67
52.5
M2_68
52.4
M2_69
52.1
M2_70
52.0
M2_71
51.9
M2_72
51.6
M2_73
51.3
M2_74
51.2
M2_75
50.7
M2_76
50.7
M2_77
48.8
M2_78
47.7
M2_79
47.2
M2_80
47.1
M2_81
46.9
M2_82
46.9
M2_83
46.6
M2_84
45.7
M2_85
44.8
M2_86
42.1
M2_87
41.8
M2_88
37.9
M2_89
34.9
M2_90
32.1
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