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BETA
  • SUMMARY

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  • RPL27A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:13070.2 nTPM
Monaco:1229.6 nTPM
Schmiedel:324.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

13070.2
HPA sample nTPM
Memory B-cell
nTPM: 13070.2
Samples: 6

Max nTPM: 15161.2
Min nTPM: 9930.0
P10809_1017 9930.0
P10809_1025 15161.2
P10809_1044 10923.0
P10809_1063 14077.7
P10809_1092 14119.5
P10809_1105 14209.5
Naive B-cell
nTPM: 11395.2
Samples: 6

Max nTPM: 12705.4
Min nTPM: 8793.7
P10809_1011 8793.7
P10809_1029 12056.8
P10809_1048 12493.1
P10809_1067 10856.0
P10809_1091 11466.3
P10809_1104 12705.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1229.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1229.6
Samples: 4

Max nTPM: 2242.0
Min nTPM: 424.6
RHH5310_R3677 957.6
RHH5218_R3590 424.6
RHH5247_R3619 2242.0
RHH5276_R3648 1294.2
Naive B-cell
nTPM: 949.8
Samples: 4

Max nTPM: 1574.3
Min nTPM: 519.0
RHH5308_R3675 884.3
RHH5216_R3588 519.0
RHH5245_R3617 1574.3
RHH5274_R3646 821.8
Non-switched memory B-cell
nTPM: 828.4
Samples: 4

Max nTPM: 1339.0
Min nTPM: 489.1
RHH5309_R3676 958.5
RHH5217_R3589 489.1
RHH5246_R3618 527.0
RHH5275_R3647 1339.0
Plasmablast
nTPM: 865.5
Samples: 4

Max nTPM: 1104.8
Min nTPM: 516.2
RHH5312_R3679 1104.8
RHH5220_R3592 516.2
RHH5249_R3621 889.7
RHH5278_R3650 951.4
Switched memory B-cell
nTPM: 788.8
Samples: 4

Max nTPM: 1083.8
Min nTPM: 489.4
RHH5311_R3678 967.4
RHH5219_R3591 614.7
RHH5248_R3620 489.4
RHH5277_R3649 1083.8

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

324.8
Schmiedel sample id TPM
Naive B-cell
TPM: 324.8
Samples: 91

Max TPM: 413.3
Min TPM: 173.5
B_CELL_NAIVE_1 413.3
B_CELL_NAIVE_2 384.7
B_CELL_NAIVE_3 381.0
B_CELL_NAIVE_4 374.0
B_CELL_NAIVE_5 373.3
B_CELL_NAIVE_6 370.6
B_CELL_NAIVE_7 370.0
B_CELL_NAIVE_8 369.5
B_CELL_NAIVE_9 369.0
B_CELL_NAIVE_10 364.3
B_CELL_NAIVE_11 364.3
B_CELL_NAIVE_12 363.9
B_CELL_NAIVE_13 362.7
B_CELL_NAIVE_14 358.1
B_CELL_NAIVE_15 354.7
B_CELL_NAIVE_16 354.6
B_CELL_NAIVE_17 354.3
B_CELL_NAIVE_18 353.3
B_CELL_NAIVE_19 347.9
B_CELL_NAIVE_20 347.3
B_CELL_NAIVE_21 346.8
B_CELL_NAIVE_22 345.4
B_CELL_NAIVE_23 345.0
B_CELL_NAIVE_24 344.0
B_CELL_NAIVE_25 343.8
B_CELL_NAIVE_26 343.7
B_CELL_NAIVE_27 342.7
B_CELL_NAIVE_28 342.7
B_CELL_NAIVE_29 342.3
B_CELL_NAIVE_30 341.6
B_CELL_NAIVE_31 340.0
B_CELL_NAIVE_32 340.0
B_CELL_NAIVE_33 338.8
B_CELL_NAIVE_34 338.8
B_CELL_NAIVE_35 336.0
B_CELL_NAIVE_36 335.8
B_CELL_NAIVE_37 334.8
B_CELL_NAIVE_38 334.1
B_CELL_NAIVE_39 332.7
B_CELL_NAIVE_40 332.1
B_CELL_NAIVE_41 331.5
B_CELL_NAIVE_42 330.4
B_CELL_NAIVE_43 327.6
B_CELL_NAIVE_44 327.6
B_CELL_NAIVE_45 327.5
B_CELL_NAIVE_46 324.2
B_CELL_NAIVE_47 324.1
B_CELL_NAIVE_48 323.5
B_CELL_NAIVE_49 322.5
B_CELL_NAIVE_50 322.2
B_CELL_NAIVE_51 321.6
B_CELL_NAIVE_52 321.2
B_CELL_NAIVE_53 320.0
B_CELL_NAIVE_54 319.7
B_CELL_NAIVE_55 319.4
B_CELL_NAIVE_56 318.6
B_CELL_NAIVE_57 317.3
B_CELL_NAIVE_58 315.9
B_CELL_NAIVE_59 315.3
B_CELL_NAIVE_60 314.6
B_CELL_NAIVE_61 314.2
B_CELL_NAIVE_62 311.4
B_CELL_NAIVE_63 310.9
B_CELL_NAIVE_64 310.7
B_CELL_NAIVE_65 307.6
B_CELL_NAIVE_66 307.4
B_CELL_NAIVE_67 307.1
B_CELL_NAIVE_68 306.8
B_CELL_NAIVE_69 306.3
B_CELL_NAIVE_70 304.2
B_CELL_NAIVE_71 303.5
B_CELL_NAIVE_72 303.0
B_CELL_NAIVE_73 302.1
B_CELL_NAIVE_74 301.6
B_CELL_NAIVE_75 300.6
B_CELL_NAIVE_76 297.9
B_CELL_NAIVE_77 293.6
B_CELL_NAIVE_78 292.8
B_CELL_NAIVE_79 290.1
B_CELL_NAIVE_80 289.1
B_CELL_NAIVE_81 285.1
B_CELL_NAIVE_82 284.9
B_CELL_NAIVE_83 282.6
B_CELL_NAIVE_84 280.3
B_CELL_NAIVE_85 279.6
B_CELL_NAIVE_86 278.6
B_CELL_NAIVE_87 275.3
B_CELL_NAIVE_88 270.3
B_CELL_NAIVE_89 263.2
B_CELL_NAIVE_90 250.0
B_CELL_NAIVE_91 173.5
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