A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13070.2
nTPM
Monaco:
1229.6
nTPM
Schmiedel:
324.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13070.2
HPA sample
nTPM
Memory B-cell nTPM: 13070.2
Samples: 6
Max nTPM: 15161.2
Min nTPM: 9930.0
P10809_1017
9930.0
P10809_1025
15161.2
P10809_1044
10923.0
P10809_1063
14077.7
P10809_1092
14119.5
P10809_1105
14209.5
Naive B-cell nTPM: 11395.2
Samples: 6
Max nTPM: 12705.4
Min nTPM: 8793.7
P10809_1011
8793.7
P10809_1029
12056.8
P10809_1048
12493.1
P10809_1067
10856.0
P10809_1091
11466.3
P10809_1104
12705.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1229.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1229.6
Samples: 4
Max nTPM: 2242.0
Min nTPM: 424.6
RHH5310_R3677
957.6
RHH5218_R3590
424.6
RHH5247_R3619
2242.0
RHH5276_R3648
1294.2
Naive B-cell nTPM: 949.8
Samples: 4
Max nTPM: 1574.3
Min nTPM: 519.0
RHH5308_R3675
884.3
RHH5216_R3588
519.0
RHH5245_R3617
1574.3
RHH5274_R3646
821.8
Non-switched memory B-cell nTPM: 828.4
Samples: 4
Max nTPM: 1339.0
Min nTPM: 489.1
RHH5309_R3676
958.5
RHH5217_R3589
489.1
RHH5246_R3618
527.0
RHH5275_R3647
1339.0
Plasmablast nTPM: 865.5
Samples: 4
Max nTPM: 1104.8
Min nTPM: 516.2
RHH5312_R3679
1104.8
RHH5220_R3592
516.2
RHH5249_R3621
889.7
RHH5278_R3650
951.4
Switched memory B-cell nTPM: 788.8
Samples: 4
Max nTPM: 1083.8
Min nTPM: 489.4
RHH5311_R3678
967.4
RHH5219_R3591
614.7
RHH5248_R3620
489.4
RHH5277_R3649
1083.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
324.8
Schmiedel sample id
TPM
Naive B-cell TPM: 324.8
Samples: 91
Max TPM: 413.3
Min TPM: 173.5
B_CELL_NAIVE_1
413.3
B_CELL_NAIVE_2
384.7
B_CELL_NAIVE_3
381.0
B_CELL_NAIVE_4
374.0
B_CELL_NAIVE_5
373.3
B_CELL_NAIVE_6
370.6
B_CELL_NAIVE_7
370.0
B_CELL_NAIVE_8
369.5
B_CELL_NAIVE_9
369.0
B_CELL_NAIVE_10
364.3
B_CELL_NAIVE_11
364.3
B_CELL_NAIVE_12
363.9
B_CELL_NAIVE_13
362.7
B_CELL_NAIVE_14
358.1
B_CELL_NAIVE_15
354.7
B_CELL_NAIVE_16
354.6
B_CELL_NAIVE_17
354.3
B_CELL_NAIVE_18
353.3
B_CELL_NAIVE_19
347.9
B_CELL_NAIVE_20
347.3
B_CELL_NAIVE_21
346.8
B_CELL_NAIVE_22
345.4
B_CELL_NAIVE_23
345.0
B_CELL_NAIVE_24
344.0
B_CELL_NAIVE_25
343.8
B_CELL_NAIVE_26
343.7
B_CELL_NAIVE_27
342.7
B_CELL_NAIVE_28
342.7
B_CELL_NAIVE_29
342.3
B_CELL_NAIVE_30
341.6
B_CELL_NAIVE_31
340.0
B_CELL_NAIVE_32
340.0
B_CELL_NAIVE_33
338.8
B_CELL_NAIVE_34
338.8
B_CELL_NAIVE_35
336.0
B_CELL_NAIVE_36
335.8
B_CELL_NAIVE_37
334.8
B_CELL_NAIVE_38
334.1
B_CELL_NAIVE_39
332.7
B_CELL_NAIVE_40
332.1
B_CELL_NAIVE_41
331.5
B_CELL_NAIVE_42
330.4
B_CELL_NAIVE_43
327.6
B_CELL_NAIVE_44
327.6
B_CELL_NAIVE_45
327.5
B_CELL_NAIVE_46
324.2
B_CELL_NAIVE_47
324.1
B_CELL_NAIVE_48
323.5
B_CELL_NAIVE_49
322.5
B_CELL_NAIVE_50
322.2
B_CELL_NAIVE_51
321.6
B_CELL_NAIVE_52
321.2
B_CELL_NAIVE_53
320.0
B_CELL_NAIVE_54
319.7
B_CELL_NAIVE_55
319.4
B_CELL_NAIVE_56
318.6
B_CELL_NAIVE_57
317.3
B_CELL_NAIVE_58
315.9
B_CELL_NAIVE_59
315.3
B_CELL_NAIVE_60
314.6
B_CELL_NAIVE_61
314.2
B_CELL_NAIVE_62
311.4
B_CELL_NAIVE_63
310.9
B_CELL_NAIVE_64
310.7
B_CELL_NAIVE_65
307.6
B_CELL_NAIVE_66
307.4
B_CELL_NAIVE_67
307.1
B_CELL_NAIVE_68
306.8
B_CELL_NAIVE_69
306.3
B_CELL_NAIVE_70
304.2
B_CELL_NAIVE_71
303.5
B_CELL_NAIVE_72
303.0
B_CELL_NAIVE_73
302.1
B_CELL_NAIVE_74
301.6
B_CELL_NAIVE_75
300.6
B_CELL_NAIVE_76
297.9
B_CELL_NAIVE_77
293.6
B_CELL_NAIVE_78
292.8
B_CELL_NAIVE_79
290.1
B_CELL_NAIVE_80
289.1
B_CELL_NAIVE_81
285.1
B_CELL_NAIVE_82
284.9
B_CELL_NAIVE_83
282.6
B_CELL_NAIVE_84
280.3
B_CELL_NAIVE_85
279.6
B_CELL_NAIVE_86
278.6
B_CELL_NAIVE_87
275.3
B_CELL_NAIVE_88
270.3
B_CELL_NAIVE_89
263.2
B_CELL_NAIVE_90
250.0
B_CELL_NAIVE_91
173.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.