A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6907.6
nTPM
Monaco:
477.7
nTPM
Schmiedel:
234.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6907.6
HPA sample
nTPM
NK-cell nTPM: 6907.6
Samples: 6
Max nTPM: 9133.9
Min nTPM: 3853.6
P10809_1013
5358.0
P10809_1033
9133.9
P10809_1052
7174.7
P10809_1071
7922.0
P10809_1093
3853.6
P10809_1103
8003.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
477.7
Monaco sample
nTPM
NK-cell nTPM: 477.7
Samples: 4
Max nTPM: 540.5
Min nTPM: 425.8
RHH5316_R3683
540.5
RHH5224_R3596
425.8
RHH5253_R3625
446.2
RHH5282_R3654
498.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
234.7
Schmiedel sample id
TPM
NK-cell TPM: 234.7
Samples: 90
Max TPM: 347.4
Min TPM: 179.8
NK_1
347.4
NK_2
318.5
NK_3
295.7
NK_4
290.3
NK_5
277.0
NK_6
276.4
NK_7
276.1
NK_8
274.4
NK_9
274.2
NK_10
271.6
NK_11
270.2
NK_12
269.1
NK_13
268.8
NK_14
263.2
NK_15
258.7
NK_16
257.3
NK_17
256.1
NK_18
255.6
NK_19
254.2
NK_20
253.7
NK_21
253.1
NK_22
252.3
NK_23
251.2
NK_24
250.6
NK_25
250.1
NK_26
249.9
NK_27
249.6
NK_28
247.6
NK_29
245.5
NK_30
244.7
NK_31
244.7
NK_32
244.4
NK_33
243.9
NK_34
243.7
NK_35
243.6
NK_36
242.5
NK_37
242.3
NK_38
241.5
NK_39
240.8
NK_40
240.6
NK_41
238.1
NK_42
236.8
NK_43
236.3
NK_44
235.3
NK_45
233.3
NK_46
231.7
NK_47
231.6
NK_48
230.7
NK_49
230.2
NK_50
230.0
NK_51
229.2
NK_52
228.0
NK_53
227.0
NK_54
225.7
NK_55
225.4
NK_56
224.3
NK_57
222.6
NK_58
221.4
NK_59
219.8
NK_60
219.7
NK_61
218.9
NK_62
218.7
NK_63
218.3
NK_64
217.7
NK_65
217.5
NK_66
216.6
NK_67
216.6
NK_68
215.6
NK_69
214.8
NK_70
213.7
NK_71
212.7
NK_72
209.9
NK_73
208.7
NK_74
208.6
NK_75
205.7
NK_76
204.1
NK_77
203.8
NK_78
203.0
NK_79
202.0
NK_80
200.4
NK_81
199.2
NK_82
197.7
NK_83
197.1
NK_84
190.8
NK_85
186.5
NK_86
186.4
NK_87
184.6
NK_88
181.7
NK_89
180.9
NK_90
179.8
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