A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5127.9
nTPM
Monaco:
695.7
nTPM
Schmiedel:
187.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5127.9
HPA sample
nTPM
Classical monocyte nTPM: 5127.9
Samples: 6
Max nTPM: 9665.2
Min nTPM: 3651.7
P10809_1003
9665.2
P10809_1020
4229.2
P10809_1039
3850.0
P10809_1058
4115.7
P10809_1080
3651.7
P10809_1107
5255.3
Intermediate monocyte nTPM: 4903.2
Samples: 6
Max nTPM: 7151.8
Min nTPM: 2832.0
P10809_1004
3755.5
P10809_1023
6104.7
P10809_1042
4894.7
P10809_1061
2832.0
P10809_1081
4680.5
P10809_1108
7151.8
Non-classical monocyte nTPM: 4579.8
Samples: 5
Max nTPM: 6386.9
Min nTPM: 3049.0
P10809_1005
4651.5
P10809_1053
4517.7
P10809_1072
3049.0
P10809_1082
4293.7
P10809_1109
6386.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
695.7
Monaco sample
nTPM
Classical monocyte nTPM: 406.3
Samples: 4
Max nTPM: 502.7
Min nTPM: 289.2
RHH5313_R3680
502.7
RHH5221_R3593
398.3
RHH5250_R3622
289.2
RHH5279_R3651
434.8
Intermediate monocyte nTPM: 695.7
Samples: 4
Max nTPM: 865.2
Min nTPM: 470.4
RHH5314_R3681
702.2
RHH5222_R3594
865.2
RHH5251_R3623
745.1
RHH5280_R3652
470.4
Non-classical monocyte nTPM: 519.6
Samples: 4
Max nTPM: 635.6
Min nTPM: 322.3
RHH5315_R3682
635.6
RHH5223_R3595
567.3
RHH5252_R3624
553.3
RHH5281_R3653
322.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.1
Schmiedel sample id
TPM
Classical monocyte TPM: 167.3
Samples: 91
Max TPM: 207.0
Min TPM: 134.8
MONOCYTES_1
207.0
MONOCYTES_2
196.1
MONOCYTES_3
192.3
MONOCYTES_4
191.5
MONOCYTES_5
191.4
MONOCYTES_6
187.0
MONOCYTES_7
184.8
MONOCYTES_8
183.8
MONOCYTES_9
183.1
MONOCYTES_10
183.0
MONOCYTES_11
182.7
MONOCYTES_12
181.5
MONOCYTES_13
181.2
MONOCYTES_14
180.2
MONOCYTES_15
178.9
MONOCYTES_16
177.8
MONOCYTES_17
176.7
MONOCYTES_18
176.0
MONOCYTES_19
175.7
MONOCYTES_20
175.6
MONOCYTES_21
175.0
MONOCYTES_22
174.9
MONOCYTES_23
174.5
MONOCYTES_24
174.3
MONOCYTES_25
173.9
MONOCYTES_26
173.6
MONOCYTES_27
173.6
MONOCYTES_28
173.2
MONOCYTES_29
172.7
MONOCYTES_30
172.6
MONOCYTES_31
172.5
MONOCYTES_32
172.4
MONOCYTES_33
172.1
MONOCYTES_34
172.0
MONOCYTES_35
171.7
MONOCYTES_36
171.6
MONOCYTES_37
170.5
MONOCYTES_38
169.3
MONOCYTES_39
169.1
MONOCYTES_40
169.0
MONOCYTES_41
168.0
MONOCYTES_42
168.0
MONOCYTES_43
167.8
MONOCYTES_44
167.8
MONOCYTES_45
167.2
MONOCYTES_46
166.5
MONOCYTES_47
165.8
MONOCYTES_48
165.8
MONOCYTES_49
165.7
MONOCYTES_50
165.1
MONOCYTES_51
164.9
MONOCYTES_52
164.4
MONOCYTES_53
164.1
MONOCYTES_54
164.0
MONOCYTES_55
163.8
MONOCYTES_56
163.3
MONOCYTES_57
163.0
MONOCYTES_58
162.5
MONOCYTES_59
162.4
MONOCYTES_60
162.1
MONOCYTES_61
162.1
MONOCYTES_62
162.0
MONOCYTES_63
161.9
MONOCYTES_64
161.8
MONOCYTES_65
161.8
MONOCYTES_66
160.7
MONOCYTES_67
160.5
MONOCYTES_68
159.9
MONOCYTES_69
159.6
MONOCYTES_70
159.6
MONOCYTES_71
159.0
MONOCYTES_72
158.9
MONOCYTES_73
157.4
MONOCYTES_74
157.3
MONOCYTES_75
156.1
MONOCYTES_76
156.0
MONOCYTES_77
155.9
MONOCYTES_78
154.3
MONOCYTES_79
154.1
MONOCYTES_80
154.1
MONOCYTES_81
153.5
MONOCYTES_82
152.2
MONOCYTES_83
151.0
MONOCYTES_84
151.0
MONOCYTES_85
150.1
MONOCYTES_86
147.1
MONOCYTES_87
145.2
MONOCYTES_88
142.6
MONOCYTES_89
142.5
MONOCYTES_90
140.8
MONOCYTES_91
134.8
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Non-classical monocyte TPM: 187.1
Samples: 90
Max TPM: 254.2
Min TPM: 157.2
M2_1
254.2
M2_2
230.7
M2_3
223.5
M2_4
220.1
M2_5
220.1
M2_6
217.3
M2_7
214.4
M2_8
213.7
M2_9
208.5
M2_10
204.6
M2_11
204.6
M2_12
204.4
M2_13
203.4
M2_14
201.6
M2_15
201.4
M2_16
200.6
M2_17
199.8
M2_18
199.5
M2_19
198.6
M2_20
197.9
M2_21
197.8
M2_22
197.5
M2_23
197.1
M2_24
196.6
M2_25
196.2
M2_26
195.3
M2_27
194.8
M2_28
194.7
M2_29
194.4
M2_30
193.8
M2_31
193.2
M2_32
192.6
M2_33
192.2
M2_34
192.0
M2_35
191.5
M2_36
191.4
M2_37
189.9
M2_38
189.3
M2_39
189.3
M2_40
188.2
M2_41
188.2
M2_42
186.2
M2_43
185.8
M2_44
185.2
M2_45
184.1
M2_46
183.3
M2_47
183.2
M2_48
183.1
M2_49
182.1
M2_50
181.8
M2_51
181.7
M2_52
181.7
M2_53
181.5
M2_54
181.2
M2_55
181.2
M2_56
180.8
M2_57
180.3
M2_58
179.8
M2_59
179.1
M2_60
179.0
M2_61
179.0
M2_62
179.0
M2_63
178.9
M2_64
178.0
M2_65
177.3
M2_66
176.4
M2_67
175.0
M2_68
174.8
M2_69
174.4
M2_70
174.3
M2_71
174.0
M2_72
173.5
M2_73
171.6
M2_74
171.0
M2_75
170.6
M2_76
169.7
M2_77
168.9
M2_78
168.7
M2_79
168.5
M2_80
168.3
M2_81
166.7
M2_82
166.2
M2_83
166.1
M2_84
165.7
M2_85
163.9
M2_86
162.6
M2_87
162.5
M2_88
159.8
M2_89
157.9
M2_90
157.2
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