A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
227.6
nTPM
Monaco:
64.3
nTPM
Schmiedel:
54.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
227.6
HPA sample
nTPM
Memory B-cell nTPM: 227.6
Samples: 6
Max nTPM: 462.8
Min nTPM: 107.4
P10809_1017
107.4
P10809_1025
210.7
P10809_1044
462.8
P10809_1063
196.4
P10809_1092
188.4
P10809_1105
200.0
Naive B-cell nTPM: 190.7
Samples: 6
Max nTPM: 320.5
Min nTPM: 88.8
P10809_1011
88.8
P10809_1029
196.8
P10809_1048
320.5
P10809_1067
179.6
P10809_1091
189.4
P10809_1104
169.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 40.5
Samples: 4
Max nTPM: 60.3
Min nTPM: 15.7
RHH5310_R3677
48.1
RHH5218_R3590
15.7
RHH5247_R3619
60.3
RHH5276_R3648
38.0
Naive B-cell nTPM: 28.3
Samples: 4
Max nTPM: 36.2
Min nTPM: 17.5
RHH5308_R3675
36.2
RHH5216_R3588
28.7
RHH5245_R3617
30.7
RHH5274_R3646
17.5
Non-switched memory B-cell nTPM: 30.6
Samples: 4
Max nTPM: 35.1
Min nTPM: 24.5
RHH5309_R3676
31.0
RHH5217_R3589
24.5
RHH5246_R3618
31.8
RHH5275_R3647
35.1
Plasmablast nTPM: 64.3
Samples: 4
Max nTPM: 82.9
Min nTPM: 54.2
RHH5312_R3679
59.7
RHH5220_R3592
60.3
RHH5249_R3621
54.2
RHH5278_R3650
82.9
Switched memory B-cell nTPM: 30.4
Samples: 4
Max nTPM: 61.0
Min nTPM: 17.5
RHH5311_R3678
61.0
RHH5219_R3591
17.5
RHH5248_R3620
18.6
RHH5277_R3649
24.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.0
Schmiedel sample id
TPM
Naive B-cell TPM: 54.0
Samples: 91
Max TPM: 78.0
Min TPM: 14.5
B_CELL_NAIVE_1
78.0
B_CELL_NAIVE_2
77.4
B_CELL_NAIVE_3
75.6
B_CELL_NAIVE_4
75.3
B_CELL_NAIVE_5
75.0
B_CELL_NAIVE_6
74.7
B_CELL_NAIVE_7
74.0
B_CELL_NAIVE_8
71.9
B_CELL_NAIVE_9
70.1
B_CELL_NAIVE_10
69.9
B_CELL_NAIVE_11
69.9
B_CELL_NAIVE_12
69.6
B_CELL_NAIVE_13
69.1
B_CELL_NAIVE_14
68.9
B_CELL_NAIVE_15
68.6
B_CELL_NAIVE_16
68.2
B_CELL_NAIVE_17
67.6
B_CELL_NAIVE_18
67.3
B_CELL_NAIVE_19
66.8
B_CELL_NAIVE_20
66.7
B_CELL_NAIVE_21
66.7
B_CELL_NAIVE_22
66.5
B_CELL_NAIVE_23
65.9
B_CELL_NAIVE_24
65.7
B_CELL_NAIVE_25
65.3
B_CELL_NAIVE_26
64.4
B_CELL_NAIVE_27
64.0
B_CELL_NAIVE_28
63.9
B_CELL_NAIVE_29
63.7
B_CELL_NAIVE_30
63.0
B_CELL_NAIVE_31
62.9
B_CELL_NAIVE_32
61.8
B_CELL_NAIVE_33
61.5
B_CELL_NAIVE_34
61.5
B_CELL_NAIVE_35
60.9
B_CELL_NAIVE_36
60.7
B_CELL_NAIVE_37
60.3
B_CELL_NAIVE_38
60.1
B_CELL_NAIVE_39
59.8
B_CELL_NAIVE_40
59.5
B_CELL_NAIVE_41
59.2
B_CELL_NAIVE_42
59.1
B_CELL_NAIVE_43
58.9
B_CELL_NAIVE_44
58.4
B_CELL_NAIVE_45
58.2
B_CELL_NAIVE_46
57.8
B_CELL_NAIVE_47
57.3
B_CELL_NAIVE_48
57.3
B_CELL_NAIVE_49
57.2
B_CELL_NAIVE_50
56.7
B_CELL_NAIVE_51
56.4
B_CELL_NAIVE_52
55.8
B_CELL_NAIVE_53
54.7
B_CELL_NAIVE_54
54.5
B_CELL_NAIVE_55
54.1
B_CELL_NAIVE_56
54.0
B_CELL_NAIVE_57
54.0
B_CELL_NAIVE_58
54.0
B_CELL_NAIVE_59
52.1
B_CELL_NAIVE_60
51.9
B_CELL_NAIVE_61
51.4
B_CELL_NAIVE_62
51.3
B_CELL_NAIVE_63
51.0
B_CELL_NAIVE_64
50.6
B_CELL_NAIVE_65
50.5
B_CELL_NAIVE_66
49.7
B_CELL_NAIVE_67
48.4
B_CELL_NAIVE_68
47.2
B_CELL_NAIVE_69
47.0
B_CELL_NAIVE_70
45.1
B_CELL_NAIVE_71
45.1
B_CELL_NAIVE_72
44.2
B_CELL_NAIVE_73
42.2
B_CELL_NAIVE_74
39.4
B_CELL_NAIVE_75
36.7
B_CELL_NAIVE_76
36.4
B_CELL_NAIVE_77
35.8
B_CELL_NAIVE_78
34.8
B_CELL_NAIVE_79
32.3
B_CELL_NAIVE_80
32.0
B_CELL_NAIVE_81
30.2
B_CELL_NAIVE_82
29.3
B_CELL_NAIVE_83
29.2
B_CELL_NAIVE_84
24.7
B_CELL_NAIVE_85
21.4
B_CELL_NAIVE_86
20.1
B_CELL_NAIVE_87
19.0
B_CELL_NAIVE_88
18.2
B_CELL_NAIVE_89
16.6
B_CELL_NAIVE_90
14.6
B_CELL_NAIVE_91
14.5
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The Human Protein Atlas project is funded
