A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
242.6
nTPM
Monaco:
60.0
nTPM
Schmiedel:
82.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
242.6
HPA sample
nTPM
Classical monocyte nTPM: 190.7
Samples: 6
Max nTPM: 259.5
Min nTPM: 105.3
P10809_1003
105.3
P10809_1020
204.2
P10809_1039
259.5
P10809_1058
168.7
P10809_1080
184.8
P10809_1107
221.8
Intermediate monocyte nTPM: 222.8
Samples: 6
Max nTPM: 296.6
Min nTPM: 155.2
P10809_1004
160.4
P10809_1023
249.3
P10809_1042
268.4
P10809_1061
155.2
P10809_1081
207.1
P10809_1108
296.6
Non-classical monocyte nTPM: 242.6
Samples: 5
Max nTPM: 315.7
Min nTPM: 148.0
P10809_1005
148.0
P10809_1053
262.6
P10809_1072
287.7
P10809_1082
199.2
P10809_1109
315.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.0
Monaco sample
nTPM
Classical monocyte nTPM: 44.8
Samples: 4
Max nTPM: 54.0
Min nTPM: 34.7
RHH5313_R3680
54.0
RHH5221_R3593
36.6
RHH5250_R3622
34.7
RHH5279_R3651
53.7
Intermediate monocyte nTPM: 60.0
Samples: 4
Max nTPM: 73.0
Min nTPM: 51.5
RHH5314_R3681
58.8
RHH5222_R3594
56.8
RHH5251_R3623
51.5
RHH5280_R3652
73.0
Non-classical monocyte nTPM: 34.9
Samples: 4
Max nTPM: 40.4
Min nTPM: 31.9
RHH5315_R3682
40.4
RHH5223_R3595
33.2
RHH5252_R3624
31.9
RHH5281_R3653
33.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.3
Schmiedel sample id
TPM
Classical monocyte TPM: 82.3
Samples: 91
Max TPM: 115.5
Min TPM: 49.1
MONOCYTES_1
115.5
MONOCYTES_2
111.4
MONOCYTES_3
106.0
MONOCYTES_4
105.0
MONOCYTES_5
103.8
MONOCYTES_6
103.2
MONOCYTES_7
102.7
MONOCYTES_8
102.4
MONOCYTES_9
101.8
MONOCYTES_10
101.6
MONOCYTES_11
101.3
MONOCYTES_12
101.0
MONOCYTES_13
100.3
MONOCYTES_14
100.0
MONOCYTES_15
99.3
MONOCYTES_16
99.2
MONOCYTES_17
98.1
MONOCYTES_18
97.3
MONOCYTES_19
96.2
MONOCYTES_20
96.1
MONOCYTES_21
96.1
MONOCYTES_22
95.5
MONOCYTES_23
94.9
MONOCYTES_24
94.3
MONOCYTES_25
92.9
MONOCYTES_26
92.5
MONOCYTES_27
91.8
MONOCYTES_28
90.9
MONOCYTES_29
90.3
MONOCYTES_30
89.5
MONOCYTES_31
89.5
MONOCYTES_32
88.9
MONOCYTES_33
87.9
MONOCYTES_34
87.7
MONOCYTES_35
87.4
MONOCYTES_36
87.4
MONOCYTES_37
86.6
MONOCYTES_38
86.3
MONOCYTES_39
86.2
MONOCYTES_40
85.7
MONOCYTES_41
85.6
MONOCYTES_42
85.3
MONOCYTES_43
85.3
MONOCYTES_44
83.5
MONOCYTES_45
83.2
MONOCYTES_46
83.1
MONOCYTES_47
82.6
MONOCYTES_48
82.0
MONOCYTES_49
81.8
MONOCYTES_50
81.2
MONOCYTES_51
80.6
MONOCYTES_52
79.5
MONOCYTES_53
79.3
MONOCYTES_54
79.2
MONOCYTES_55
78.1
MONOCYTES_56
78.1
MONOCYTES_57
77.9
MONOCYTES_58
76.3
MONOCYTES_59
75.9
MONOCYTES_60
75.4
MONOCYTES_61
74.6
MONOCYTES_62
73.6
MONOCYTES_63
73.1
MONOCYTES_64
73.0
MONOCYTES_65
72.9
MONOCYTES_66
71.6
MONOCYTES_67
71.3
MONOCYTES_68
70.7
MONOCYTES_69
70.7
MONOCYTES_70
70.5
MONOCYTES_71
70.4
MONOCYTES_72
70.3
MONOCYTES_73
69.9
MONOCYTES_74
69.8
MONOCYTES_75
69.7
MONOCYTES_76
69.1
MONOCYTES_77
68.7
MONOCYTES_78
68.1
MONOCYTES_79
64.7
MONOCYTES_80
64.7
MONOCYTES_81
63.8
MONOCYTES_82
62.3
MONOCYTES_83
61.9
MONOCYTES_84
61.5
MONOCYTES_85
59.4
MONOCYTES_86
56.7
MONOCYTES_87
53.4
MONOCYTES_88
53.4
MONOCYTES_89
51.6
MONOCYTES_90
51.2
MONOCYTES_91
49.1
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Non-classical monocyte TPM: 82.1
Samples: 90
Max TPM: 116.9
Min TPM: 27.5
M2_1
116.9
M2_2
115.7
M2_3
115.4
M2_4
113.8
M2_5
110.4
M2_6
106.9
M2_7
106.2
M2_8
106.0
M2_9
105.5
M2_10
104.1
M2_11
104.1
M2_12
101.8
M2_13
101.5
M2_14
101.5
M2_15
101.0
M2_16
100.6
M2_17
99.3
M2_18
98.9
M2_19
97.7
M2_20
97.6
M2_21
96.9
M2_22
96.8
M2_23
96.2
M2_24
96.2
M2_25
95.7
M2_26
95.3
M2_27
95.1
M2_28
94.4
M2_29
94.3
M2_30
94.0
M2_31
93.8
M2_32
92.9
M2_33
91.2
M2_34
91.2
M2_35
91.1
M2_36
90.9
M2_37
90.3
M2_38
90.0
M2_39
89.4
M2_40
88.8
M2_41
88.4
M2_42
88.2
M2_43
87.3
M2_44
87.2
M2_45
86.8
M2_46
85.4
M2_47
85.3
M2_48
84.1
M2_49
84.0
M2_50
84.0
M2_51
83.9
M2_52
82.8
M2_53
82.2
M2_54
82.0
M2_55
81.9
M2_56
81.4
M2_57
81.3
M2_58
81.3
M2_59
78.8
M2_60
77.8
M2_61
76.6
M2_62
76.2
M2_63
75.9
M2_64
75.2
M2_65
74.8
M2_66
73.1
M2_67
73.0
M2_68
71.2
M2_69
70.6
M2_70
70.6
M2_71
67.1
M2_72
67.0
M2_73
61.0
M2_74
60.0
M2_75
59.3
M2_76
58.9
M2_77
58.0
M2_78
55.7
M2_79
54.3
M2_80
52.4
M2_81
51.8
M2_82
51.6
M2_83
48.8
M2_84
46.8
M2_85
42.7
M2_86
42.4
M2_87
38.0
M2_88
34.6
M2_89
29.6
M2_90
27.5
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