A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
186.3
nTPM
Monaco:
35.0
nTPM
Schmiedel:
116.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.3
HPA sample
nTPM
NK-cell nTPM: 186.3
Samples: 6
Max nTPM: 271.0
Min nTPM: 88.1
P10809_1013
88.1
P10809_1033
271.0
P10809_1052
212.8
P10809_1071
204.1
P10809_1093
147.6
P10809_1103
194.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Monaco sample
nTPM
NK-cell nTPM: 35.0
Samples: 4
Max nTPM: 48.9
Min nTPM: 20.2
RHH5316_R3683
38.0
RHH5224_R3596
32.8
RHH5253_R3625
20.2
RHH5282_R3654
48.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.0
Schmiedel sample id
TPM
NK-cell TPM: 116.0
Samples: 90
Max TPM: 173.7
Min TPM: 47.1
NK_1
173.7
NK_2
157.7
NK_3
155.2
NK_4
155.1
NK_5
154.6
NK_6
153.0
NK_7
148.1
NK_8
145.8
NK_9
145.6
NK_10
144.9
NK_11
144.0
NK_12
143.9
NK_13
143.7
NK_14
143.0
NK_15
141.2
NK_16
141.0
NK_17
140.0
NK_18
139.6
NK_19
139.5
NK_20
139.5
NK_21
138.4
NK_22
138.3
NK_23
137.4
NK_24
137.1
NK_25
137.0
NK_26
134.8
NK_27
134.1
NK_28
134.0
NK_29
133.5
NK_30
131.8
NK_31
131.4
NK_32
131.3
NK_33
129.9
NK_34
128.9
NK_35
128.6
NK_36
127.6
NK_37
127.1
NK_38
126.8
NK_39
126.5
NK_40
126.5
NK_41
125.7
NK_42
124.5
NK_43
122.9
NK_44
122.9
NK_45
122.4
NK_46
122.3
NK_47
121.8
NK_48
121.6
NK_49
119.1
NK_50
116.3
NK_51
115.1
NK_52
114.6
NK_53
114.0
NK_54
112.0
NK_55
111.9
NK_56
108.5
NK_57
106.9
NK_58
105.2
NK_59
103.7
NK_60
103.6
NK_61
102.8
NK_62
102.1
NK_63
101.9
NK_64
101.3
NK_65
98.6
NK_66
98.4
NK_67
98.3
NK_68
98.0
NK_69
97.7
NK_70
96.2
NK_71
94.6
NK_72
94.0
NK_73
93.8
NK_74
90.5
NK_75
89.2
NK_76
89.2
NK_77
88.6
NK_78
84.2
NK_79
83.5
NK_80
83.0
NK_81
81.1
NK_82
78.9
NK_83
76.5
NK_84
67.8
NK_85
67.1
NK_86
63.7
NK_87
59.6
NK_88
58.2
NK_89
50.5
NK_90
47.1
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