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BETA
  • SUMMARY

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  • BRAIN

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  • RPL13
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:8250.6 nTPM
Monaco:1413.7 nTPM
Schmiedel:279.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

8250.6
HPA sample nTPM
Memory B-cell
nTPM: 7825.6
Samples: 6

Max nTPM: 10115.3
Min nTPM: 5371.7
P10809_1017 5371.7
P10809_1025 8068.7
P10809_1044 10115.3
P10809_1063 7460.6
P10809_1092 7094.6
P10809_1105 8842.8
Naive B-cell
nTPM: 8250.7
Samples: 6

Max nTPM: 9418.6
Min nTPM: 6925.2
P10809_1011 6925.2
P10809_1029 9248.5
P10809_1048 8732.6
P10809_1067 7726.9
P10809_1091 7452.1
P10809_1104 9418.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1413.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1413.7
Samples: 4

Max nTPM: 2557.4
Min nTPM: 527.0
RHH5310_R3677 1463.4
RHH5218_R3590 527.0
RHH5247_R3619 2557.4
RHH5276_R3648 1107.0
Naive B-cell
nTPM: 1371.4
Samples: 4

Max nTPM: 1900.7
Min nTPM: 828.8
RHH5308_R3675 1900.7
RHH5216_R3588 828.8
RHH5245_R3617 1641.0
RHH5274_R3646 1115.0
Non-switched memory B-cell
nTPM: 1185.7
Samples: 4

Max nTPM: 1630.2
Min nTPM: 808.0
RHH5309_R3676 1630.2
RHH5217_R3589 808.0
RHH5246_R3618 1113.5
RHH5275_R3647 1191.2
Plasmablast
nTPM: 784.0
Samples: 4

Max nTPM: 1014.4
Min nTPM: 541.3
RHH5312_R3679 1014.4
RHH5220_R3592 541.3
RHH5249_R3621 879.1
RHH5278_R3650 701.3
Switched memory B-cell
nTPM: 1302.2
Samples: 4

Max nTPM: 2162.6
Min nTPM: 866.8
RHH5311_R3678 2162.6
RHH5219_R3591 1110.0
RHH5248_R3620 866.8
RHH5277_R3649 1069.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

279.4
Schmiedel sample id TPM
Naive B-cell
TPM: 279.4
Samples: 91

Max TPM: 426.8
Min TPM: 72.8
B_CELL_NAIVE_1 426.8
B_CELL_NAIVE_2 409.1
B_CELL_NAIVE_3 394.9
B_CELL_NAIVE_4 391.4
B_CELL_NAIVE_5 376.7
B_CELL_NAIVE_6 373.6
B_CELL_NAIVE_7 367.3
B_CELL_NAIVE_8 366.5
B_CELL_NAIVE_9 364.9
B_CELL_NAIVE_10 362.2
B_CELL_NAIVE_11 359.6
B_CELL_NAIVE_12 353.0
B_CELL_NAIVE_13 351.4
B_CELL_NAIVE_14 348.7
B_CELL_NAIVE_15 344.6
B_CELL_NAIVE_16 344.5
B_CELL_NAIVE_17 341.0
B_CELL_NAIVE_18 336.7
B_CELL_NAIVE_19 336.2
B_CELL_NAIVE_20 336.0
B_CELL_NAIVE_21 335.0
B_CELL_NAIVE_22 333.2
B_CELL_NAIVE_23 330.8
B_CELL_NAIVE_24 330.0
B_CELL_NAIVE_25 330.0
B_CELL_NAIVE_26 328.9
B_CELL_NAIVE_27 327.2
B_CELL_NAIVE_28 326.1
B_CELL_NAIVE_29 322.6
B_CELL_NAIVE_30 320.8
B_CELL_NAIVE_31 320.2
B_CELL_NAIVE_32 318.6
B_CELL_NAIVE_33 317.8
B_CELL_NAIVE_34 315.1
B_CELL_NAIVE_35 312.5
B_CELL_NAIVE_36 312.3
B_CELL_NAIVE_37 311.4
B_CELL_NAIVE_38 311.0
B_CELL_NAIVE_39 309.6
B_CELL_NAIVE_40 309.6
B_CELL_NAIVE_41 300.6
B_CELL_NAIVE_42 297.8
B_CELL_NAIVE_43 297.0
B_CELL_NAIVE_44 294.1
B_CELL_NAIVE_45 293.1
B_CELL_NAIVE_46 292.9
B_CELL_NAIVE_47 292.9
B_CELL_NAIVE_48 292.1
B_CELL_NAIVE_49 291.6
B_CELL_NAIVE_50 290.0
B_CELL_NAIVE_51 288.9
B_CELL_NAIVE_52 285.3
B_CELL_NAIVE_53 281.2
B_CELL_NAIVE_54 276.9
B_CELL_NAIVE_55 267.5
B_CELL_NAIVE_56 260.8
B_CELL_NAIVE_57 260.7
B_CELL_NAIVE_58 259.9
B_CELL_NAIVE_59 259.9
B_CELL_NAIVE_60 259.2
B_CELL_NAIVE_61 258.2
B_CELL_NAIVE_62 256.1
B_CELL_NAIVE_63 255.8
B_CELL_NAIVE_64 253.1
B_CELL_NAIVE_65 252.9
B_CELL_NAIVE_66 252.7
B_CELL_NAIVE_67 250.2
B_CELL_NAIVE_68 240.5
B_CELL_NAIVE_69 237.6
B_CELL_NAIVE_70 229.3
B_CELL_NAIVE_71 226.1
B_CELL_NAIVE_72 222.6
B_CELL_NAIVE_73 218.1
B_CELL_NAIVE_74 214.0
B_CELL_NAIVE_75 211.7
B_CELL_NAIVE_76 209.4
B_CELL_NAIVE_77 208.6
B_CELL_NAIVE_78 186.6
B_CELL_NAIVE_79 185.7
B_CELL_NAIVE_80 178.4
B_CELL_NAIVE_81 175.2
B_CELL_NAIVE_82 170.9
B_CELL_NAIVE_83 168.9
B_CELL_NAIVE_84 160.0
B_CELL_NAIVE_85 148.3
B_CELL_NAIVE_86 143.7
B_CELL_NAIVE_87 126.5
B_CELL_NAIVE_88 126.2
B_CELL_NAIVE_89 125.3
B_CELL_NAIVE_90 105.6
B_CELL_NAIVE_91 72.8
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