A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8250.6
nTPM
Monaco:
1413.7
nTPM
Schmiedel:
279.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8250.6
HPA sample
nTPM
Memory B-cell nTPM: 7825.6
Samples: 6
Max nTPM: 10115.3
Min nTPM: 5371.7
P10809_1017
5371.7
P10809_1025
8068.7
P10809_1044
10115.3
P10809_1063
7460.6
P10809_1092
7094.6
P10809_1105
8842.8
Naive B-cell nTPM: 8250.7
Samples: 6
Max nTPM: 9418.6
Min nTPM: 6925.2
P10809_1011
6925.2
P10809_1029
9248.5
P10809_1048
8732.6
P10809_1067
7726.9
P10809_1091
7452.1
P10809_1104
9418.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1413.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1413.7
Samples: 4
Max nTPM: 2557.4
Min nTPM: 527.0
RHH5310_R3677
1463.4
RHH5218_R3590
527.0
RHH5247_R3619
2557.4
RHH5276_R3648
1107.0
Naive B-cell nTPM: 1371.4
Samples: 4
Max nTPM: 1900.7
Min nTPM: 828.8
RHH5308_R3675
1900.7
RHH5216_R3588
828.8
RHH5245_R3617
1641.0
RHH5274_R3646
1115.0
Non-switched memory B-cell nTPM: 1185.7
Samples: 4
Max nTPM: 1630.2
Min nTPM: 808.0
RHH5309_R3676
1630.2
RHH5217_R3589
808.0
RHH5246_R3618
1113.5
RHH5275_R3647
1191.2
Plasmablast nTPM: 784.0
Samples: 4
Max nTPM: 1014.4
Min nTPM: 541.3
RHH5312_R3679
1014.4
RHH5220_R3592
541.3
RHH5249_R3621
879.1
RHH5278_R3650
701.3
Switched memory B-cell nTPM: 1302.2
Samples: 4
Max nTPM: 2162.6
Min nTPM: 866.8
RHH5311_R3678
2162.6
RHH5219_R3591
1110.0
RHH5248_R3620
866.8
RHH5277_R3649
1069.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
279.4
Schmiedel sample id
TPM
Naive B-cell TPM: 279.4
Samples: 91
Max TPM: 426.8
Min TPM: 72.8
B_CELL_NAIVE_1
426.8
B_CELL_NAIVE_2
409.1
B_CELL_NAIVE_3
394.9
B_CELL_NAIVE_4
391.4
B_CELL_NAIVE_5
376.7
B_CELL_NAIVE_6
373.6
B_CELL_NAIVE_7
367.3
B_CELL_NAIVE_8
366.5
B_CELL_NAIVE_9
364.9
B_CELL_NAIVE_10
362.2
B_CELL_NAIVE_11
359.6
B_CELL_NAIVE_12
353.0
B_CELL_NAIVE_13
351.4
B_CELL_NAIVE_14
348.7
B_CELL_NAIVE_15
344.6
B_CELL_NAIVE_16
344.5
B_CELL_NAIVE_17
341.0
B_CELL_NAIVE_18
336.7
B_CELL_NAIVE_19
336.2
B_CELL_NAIVE_20
336.0
B_CELL_NAIVE_21
335.0
B_CELL_NAIVE_22
333.2
B_CELL_NAIVE_23
330.8
B_CELL_NAIVE_24
330.0
B_CELL_NAIVE_25
330.0
B_CELL_NAIVE_26
328.9
B_CELL_NAIVE_27
327.2
B_CELL_NAIVE_28
326.1
B_CELL_NAIVE_29
322.6
B_CELL_NAIVE_30
320.8
B_CELL_NAIVE_31
320.2
B_CELL_NAIVE_32
318.6
B_CELL_NAIVE_33
317.8
B_CELL_NAIVE_34
315.1
B_CELL_NAIVE_35
312.5
B_CELL_NAIVE_36
312.3
B_CELL_NAIVE_37
311.4
B_CELL_NAIVE_38
311.0
B_CELL_NAIVE_39
309.6
B_CELL_NAIVE_40
309.6
B_CELL_NAIVE_41
300.6
B_CELL_NAIVE_42
297.8
B_CELL_NAIVE_43
297.0
B_CELL_NAIVE_44
294.1
B_CELL_NAIVE_45
293.1
B_CELL_NAIVE_46
292.9
B_CELL_NAIVE_47
292.9
B_CELL_NAIVE_48
292.1
B_CELL_NAIVE_49
291.6
B_CELL_NAIVE_50
290.0
B_CELL_NAIVE_51
288.9
B_CELL_NAIVE_52
285.3
B_CELL_NAIVE_53
281.2
B_CELL_NAIVE_54
276.9
B_CELL_NAIVE_55
267.5
B_CELL_NAIVE_56
260.8
B_CELL_NAIVE_57
260.7
B_CELL_NAIVE_58
259.9
B_CELL_NAIVE_59
259.9
B_CELL_NAIVE_60
259.2
B_CELL_NAIVE_61
258.2
B_CELL_NAIVE_62
256.1
B_CELL_NAIVE_63
255.8
B_CELL_NAIVE_64
253.1
B_CELL_NAIVE_65
252.9
B_CELL_NAIVE_66
252.7
B_CELL_NAIVE_67
250.2
B_CELL_NAIVE_68
240.5
B_CELL_NAIVE_69
237.6
B_CELL_NAIVE_70
229.3
B_CELL_NAIVE_71
226.1
B_CELL_NAIVE_72
222.6
B_CELL_NAIVE_73
218.1
B_CELL_NAIVE_74
214.0
B_CELL_NAIVE_75
211.7
B_CELL_NAIVE_76
209.4
B_CELL_NAIVE_77
208.6
B_CELL_NAIVE_78
186.6
B_CELL_NAIVE_79
185.7
B_CELL_NAIVE_80
178.4
B_CELL_NAIVE_81
175.2
B_CELL_NAIVE_82
170.9
B_CELL_NAIVE_83
168.9
B_CELL_NAIVE_84
160.0
B_CELL_NAIVE_85
148.3
B_CELL_NAIVE_86
143.7
B_CELL_NAIVE_87
126.5
B_CELL_NAIVE_88
126.2
B_CELL_NAIVE_89
125.3
B_CELL_NAIVE_90
105.6
B_CELL_NAIVE_91
72.8
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