A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3203.0
nTPM
Monaco:
603.8
nTPM
Schmiedel:
155.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3203.0
HPA sample
nTPM
Classical monocyte nTPM: 3203.0
Samples: 6
Max nTPM: 5765.2
Min nTPM: 2073.7
P10809_1003
5765.2
P10809_1020
2688.1
P10809_1039
2703.9
P10809_1058
2354.7
P10809_1080
2073.7
P10809_1107
3632.6
Intermediate monocyte nTPM: 2452.5
Samples: 6
Max nTPM: 4245.3
Min nTPM: 1511.6
P10809_1004
1982.8
P10809_1023
2941.8
P10809_1042
2280.1
P10809_1061
1511.6
P10809_1081
1753.3
P10809_1108
4245.3
Non-classical monocyte nTPM: 1920.5
Samples: 5
Max nTPM: 2883.9
Min nTPM: 1395.0
P10809_1005
1950.1
P10809_1053
1753.0
P10809_1072
1620.6
P10809_1082
1395.0
P10809_1109
2883.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
603.8
Monaco sample
nTPM
Classical monocyte nTPM: 517.9
Samples: 4
Max nTPM: 593.8
Min nTPM: 304.0
RHH5313_R3680
593.8
RHH5221_R3593
304.0
RHH5250_R3622
583.1
RHH5279_R3651
590.5
Intermediate monocyte nTPM: 603.9
Samples: 4
Max nTPM: 706.7
Min nTPM: 549.8
RHH5314_R3681
706.7
RHH5222_R3594
550.6
RHH5251_R3623
549.8
RHH5280_R3652
608.3
Non-classical monocyte nTPM: 424.6
Samples: 4
Max nTPM: 578.4
Min nTPM: 359.5
RHH5315_R3682
578.4
RHH5223_R3595
359.5
RHH5252_R3624
381.7
RHH5281_R3653
378.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.7
Schmiedel sample id
TPM
Classical monocyte TPM: 155.7
Samples: 91
Max TPM: 238.1
Min TPM: 77.6
MONOCYTES_1
238.1
MONOCYTES_2
231.0
MONOCYTES_3
224.5
MONOCYTES_4
211.4
MONOCYTES_5
203.5
MONOCYTES_6
199.8
MONOCYTES_7
198.3
MONOCYTES_8
197.5
MONOCYTES_9
197.3
MONOCYTES_10
194.8
MONOCYTES_11
193.9
MONOCYTES_12
193.8
MONOCYTES_13
193.3
MONOCYTES_14
192.8
MONOCYTES_15
192.5
MONOCYTES_16
191.8
MONOCYTES_17
190.1
MONOCYTES_18
189.2
MONOCYTES_19
186.9
MONOCYTES_20
185.3
MONOCYTES_21
185.2
MONOCYTES_22
181.5
MONOCYTES_23
180.6
MONOCYTES_24
180.5
MONOCYTES_25
177.2
MONOCYTES_26
177.1
MONOCYTES_27
176.5
MONOCYTES_28
176.2
MONOCYTES_29
173.8
MONOCYTES_30
172.0
MONOCYTES_31
168.7
MONOCYTES_32
167.6
MONOCYTES_33
167.4
MONOCYTES_34
166.3
MONOCYTES_35
166.0
MONOCYTES_36
164.7
MONOCYTES_37
163.9
MONOCYTES_38
163.3
MONOCYTES_39
163.2
MONOCYTES_40
162.8
MONOCYTES_41
162.3
MONOCYTES_42
161.2
MONOCYTES_43
160.6
MONOCYTES_44
160.2
MONOCYTES_45
156.4
MONOCYTES_46
156.0
MONOCYTES_47
155.3
MONOCYTES_48
155.0
MONOCYTES_49
151.7
MONOCYTES_50
150.9
MONOCYTES_51
150.6
MONOCYTES_52
150.4
MONOCYTES_53
149.5
MONOCYTES_54
149.0
MONOCYTES_55
145.8
MONOCYTES_56
145.1
MONOCYTES_57
145.0
MONOCYTES_58
141.8
MONOCYTES_59
141.1
MONOCYTES_60
139.9
MONOCYTES_61
139.8
MONOCYTES_62
138.6
MONOCYTES_63
137.7
MONOCYTES_64
137.6
MONOCYTES_65
135.6
MONOCYTES_66
135.3
MONOCYTES_67
133.2
MONOCYTES_68
132.9
MONOCYTES_69
130.0
MONOCYTES_70
129.2
MONOCYTES_71
128.4
MONOCYTES_72
127.4
MONOCYTES_73
127.1
MONOCYTES_74
124.9
MONOCYTES_75
124.2
MONOCYTES_76
122.2
MONOCYTES_77
120.8
MONOCYTES_78
119.8
MONOCYTES_79
119.3
MONOCYTES_80
117.9
MONOCYTES_81
113.6
MONOCYTES_82
113.5
MONOCYTES_83
111.4
MONOCYTES_84
111.2
MONOCYTES_85
107.8
MONOCYTES_86
104.8
MONOCYTES_87
100.4
MONOCYTES_88
98.9
MONOCYTES_89
95.7
MONOCYTES_90
86.0
MONOCYTES_91
77.6
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Non-classical monocyte TPM: 112.0
Samples: 90
Max TPM: 222.5
Min TPM: 49.3
M2_1
222.5
M2_2
158.8
M2_3
151.0
M2_4
145.1
M2_5
145.1
M2_6
144.9
M2_7
144.8
M2_8
143.1
M2_9
141.0
M2_10
140.8
M2_11
140.2
M2_12
139.6
M2_13
137.5
M2_14
137.2
M2_15
136.6
M2_16
135.2
M2_17
134.4
M2_18
133.9
M2_19
132.4
M2_20
132.3
M2_21
131.2
M2_22
130.9
M2_23
129.8
M2_24
128.4
M2_25
126.5
M2_26
126.5
M2_27
126.5
M2_28
126.1
M2_29
126.0
M2_30
125.8
M2_31
125.1
M2_32
124.4
M2_33
124.1
M2_34
123.6
M2_35
122.1
M2_36
121.6
M2_37
120.3
M2_38
120.2
M2_39
120.2
M2_40
119.1
M2_41
118.9
M2_42
118.2
M2_43
118.0
M2_44
116.5
M2_45
115.0
M2_46
114.7
M2_47
114.2
M2_48
113.8
M2_49
113.0
M2_50
111.5
M2_51
110.4
M2_52
109.4
M2_53
109.3
M2_54
108.6
M2_55
106.6
M2_56
106.1
M2_57
105.4
M2_58
104.3
M2_59
104.2
M2_60
102.6
M2_61
102.5
M2_62
101.9
M2_63
101.5
M2_64
100.1
M2_65
98.9
M2_66
98.7
M2_67
96.9
M2_68
96.2
M2_69
90.0
M2_70
87.9
M2_71
87.5
M2_72
87.5
M2_73
86.7
M2_74
85.1
M2_75
82.8
M2_76
82.2
M2_77
80.0
M2_78
79.7
M2_79
79.5
M2_80
79.2
M2_81
79.1
M2_82
77.1
M2_83
71.4
M2_84
69.8
M2_85
68.6
M2_86
67.6
M2_87
65.2
M2_88
62.9
M2_89
53.1
M2_90
49.3
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