A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4096.4
nTPM
Monaco:
418.0
nTPM
Schmiedel:
169.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4096.4
HPA sample
nTPM
NK-cell nTPM: 4096.4
Samples: 6
Max nTPM: 5601.0
Min nTPM: 2212.3
P10809_1013
2658.2
P10809_1033
5221.9
P10809_1052
4114.8
P10809_1071
4770.4
P10809_1093
2212.3
P10809_1103
5601.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
418.0
Monaco sample
nTPM
NK-cell nTPM: 418.0
Samples: 4
Max nTPM: 510.0
Min nTPM: 332.7
RHH5316_R3683
510.0
RHH5224_R3596
367.8
RHH5253_R3625
332.7
RHH5282_R3654
461.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
169.0
Schmiedel sample id
TPM
NK-cell TPM: 169.0
Samples: 90
Max TPM: 329.4
Min TPM: 71.6
NK_1
329.4
NK_2
272.9
NK_3
254.5
NK_4
250.5
NK_5
236.1
NK_6
229.8
NK_7
229.6
NK_8
226.9
NK_9
225.3
NK_10
224.7
NK_11
223.4
NK_12
220.2
NK_13
220.0
NK_14
217.3
NK_15
217.2
NK_16
216.0
NK_17
210.6
NK_18
210.3
NK_19
207.6
NK_20
207.2
NK_21
205.2
NK_22
204.5
NK_23
203.7
NK_24
202.9
NK_25
202.1
NK_26
201.3
NK_27
200.4
NK_28
200.2
NK_29
196.7
NK_30
194.8
NK_31
194.5
NK_32
191.9
NK_33
190.8
NK_34
185.6
NK_35
184.9
NK_36
181.3
NK_37
178.0
NK_38
176.8
NK_39
176.4
NK_40
174.0
NK_41
172.7
NK_42
170.9
NK_43
167.4
NK_44
167.3
NK_45
167.0
NK_46
166.0
NK_47
163.4
NK_48
163.0
NK_49
161.8
NK_50
161.7
NK_51
161.4
NK_52
160.3
NK_53
156.8
NK_54
156.8
NK_55
155.2
NK_56
154.9
NK_57
153.8
NK_58
152.1
NK_59
150.7
NK_60
147.8
NK_61
142.8
NK_62
142.7
NK_63
135.8
NK_64
134.7
NK_65
134.0
NK_66
134.0
NK_67
131.2
NK_68
131.1
NK_69
129.8
NK_70
129.3
NK_71
129.2
NK_72
129.0
NK_73
125.6
NK_74
123.8
NK_75
122.3
NK_76
116.2
NK_77
114.8
NK_78
113.8
NK_79
112.8
NK_80
110.8
NK_81
109.0
NK_82
108.6
NK_83
105.1
NK_84
104.8
NK_85
103.2
NK_86
101.8
NK_87
97.5
NK_88
96.5
NK_89
82.9
NK_90
71.6
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