MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:571.6 nTPM
HPA Brain:725.9 nTPM
GTEx:571.6 nTPM
FANTOM5:647.6 Scaled Tags Per Million
Pig:629.6 nTPM
Mouse:591.0 nTPM
Allen mouse:22.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 725.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 656.3
2586 Male, age 75, left hemisphere 850.3
2828 Female, age 72, unknown 704.0
2666 Male, age 74, left hemisphere 703.6
1827 Male, age 72, unknown 642.3
2219 Male, age 76, both hemispheres 630.1
2411 Female, age 72, unknown 623.3
2019 Male, age 18, unknown 614.1
1870 Female, age 42, unknown 612.4
1833 Male, age 53, unknown 602.3
1830 Male, age 51, unknown 580.8
Dorsal raphe nucleus
nTPM: 608.3
2016 Female, age 72, unknown 620.1
2750 Male, age 76, both hemispheres 615.2
2298 Female, age 72, unknown 606.1
1828 Male, age 53, unknown 601.9
2047 Male, age 72, unknown 597.9
Inferior colliculus
nTPM: 615.6
1848 Female, age 42, unknown 665.1
2849 Male, age 72, unknown 608.6
1890 Male, age 53, unknown 605.7
2097 Female, age 72, unknown 582.9
Median raphe nucleus
nTPM: 564.7
2220 Male, age 76, midline 564.7
Periaquaductal grey, anterior
nTPM: 725.9
2502 Female, age 75, unknown 809.3
1947 Male, age 18, unknown 692.1
1795 Male, age 51, unknown 676.1
Periaquaductal grey, dorsal
nTPM: 542.5
1840 Male, age 53, unknown 615.5
2464 Female, age 72, unknown 572.4
1831 Male, age 72, unknown 533.1
2850 Male, age 76, both hemispheres 449.3
Periaquaductal grey, lateral
nTPM: 541.4
2272 Male, age 74, both hemispheres 586.5
2053 Male, age 18, unknown 584.3
2140 Male, age 76, both hemispheres 453.4
Pretectal area
nTPM: 600.5
1816 Male, age 51, unknown 681.2
2007 Male, age 72, unknown 667.0
1817 Female, age 42, unknown 665.0
1944 Female, age 72, unknown 621.8
1815 Male, age 53, unknown 606.8
2407 Male, age 75, both hemispheres 592.7
2825 Male, age 18, unknown 592.4
2667 Female, age 75, unknown 587.9
2224 Female, age 72, unknown 543.4
2273 Male, age 74, both hemispheres 534.5
2316 Male, age 76, right hemisphere 512.6
Red nucleus
nTPM: 645.4
2584 Male, age 75, left hemisphere 751.4
2503 Female, age 72, unknown 716.7
2588 Male, age 74, left hemisphere 663.6
2769 Male, age 72, unknown 662.2
2227 Male, age 72, unknown 659.0
1821 Female, age 72, unknown 653.6
1865 Male, age 51, unknown 651.1
2785 Male, age 18, unknown 635.5
1904 Male, age 53, unknown 634.2
1954 Female, age 42, unknown 606.5
2725 Female, age 75, unknown 565.2
2823 Male, age 76, right hemisphere 545.8
Substantia nigra
nTPM: 701.5
1916 Female, age 42, unknown 875.0
2665 Male, age 74, both hemispheres 782.3
1851 Male, age 51, unknown 770.9
2590 Female, age 75, unknown 694.4
2241 Male, age 72, unknown 689.5
1941 Male, age 53, unknown 683.1
2583 Male, age 75, right hemisphere 676.7
2699 Male, age 18, unknown 669.9
1889 Female, age 72, unknown 627.3
2409 Female, age 72, unknown 545.8
Superior colliculus
nTPM: 647.2
2664 Male, age 75, both hemispheres 768.0
1796 Male, age 53, unknown 699.8
2261 Male, age 18, unknown 699.2
2668 Female, age 75, unknown 668.6
2087 Female, age 72, unknown 647.1
2587 Male, age 74, left hemisphere 643.0
1839 Male, age 51, unknown 616.8
1913 Female, age 42, unknown 598.8
1995 Male, age 72, unknown 583.5
1895 Male, age 76, right hemisphere 546.8
Ventral tegmental area
nTPM: 660.6
2410 Female, age 72, unknown 710.5
1915 Female, age 42, unknown 687.0
2223 Female, age 72, unknown 660.5
2218 Male, age 76, both hemispheres 654.5
1942 Male, age 51, unknown 649.0
2021 Male, age 53, unknown 602.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 571.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 571.6
Samples: 183

Max nTPM: 1101.1
Min nTPM: 267.7
Std nTPM: 128.7
Median nTPM: 561.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1101.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1014.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 945.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 920.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 879.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 868.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 833.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 828.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 819.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 804.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 796.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 647.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 647.6
FF:10158-103A5 76 years, female 647.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 629.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 523.3
Samples: 4

Max nTPM: 602.9
Min nTPM: 469.6
Sample A Female 602.9
Sample B Female 488.9
Sample C Male 531.8
Sample D Male 469.6
Midbrain
nTPM: 568.3
Samples: 4

Max nTPM: 637.6
Min nTPM: 491.3
Sample A Female 637.6
Sample B Female 491.3
Sample C Male 623.6
Sample D Male 520.6
Periaqueductal gray
nTPM: 413.4
Samples: 3

Max nTPM: 446.4
Min nTPM: 348.2
Sample B Female 445.6
Sample C Male 446.4
Sample D Male 348.2
Superior colliculi
nTPM: 629.7
Samples: 4

Max nTPM: 661.3
Min nTPM: 587.8
Sample A Female 661.3
Sample B Female 659.4
Sample C Male 610.1
Sample D Male 587.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 591.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 591.0
Samples: 4

Max nTPM: 664.1
Min nTPM: 551.3
Sample A Male 664.1
Sample B Male 551.3
Sample C Female 555.9
Sample D Female 592.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
308055136 Antisense, RP_140710_01_A05, Mouse strain C57BL/6J (56 days, male) 25.2
67936204 Antisense, RP_041102_01_B02, Mouse strain C57BL/6J (56 days, male) 20.6

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