On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
571.6
nTPM
HPA Brain:
728.5
nTPM
GTEx:
571.6
nTPM
FANTOM5:
647.6
Scaled Tags Per Million
Macaque:
327.9
nTPM
Mouse:
873.6
nTPM
Rat:
494.5
nTPM
Pig:
632.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
728.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 658.6
2586
Male, age 75, left hemisphere
852.7
2828
Female, age 72, unknown
706.4
2666
Male, age 74, left hemisphere
706.2
1827
Male, age 72, unknown
644.6
2219
Male, age 76, both hemispheres
632.6
2411
Female, age 72, unknown
625.4
2019
Male, age 18, unknown
616.2
1870
Female, age 42, unknown
614.2
1833
Male, age 53, unknown
604.6
1830
Male, age 51, unknown
582.8
Dorsal raphe nucleus nTPM: 610.6
2016
Female, age 72, unknown
622.6
2750
Male, age 76, both hemispheres
617.6
2298
Female, age 72, unknown
608.4
1828
Male, age 53, unknown
604.2
2047
Male, age 72, unknown
599.9
Inferior colliculus nTPM: 617.8
1848
Female, age 42, unknown
667.3
2849
Male, age 72, unknown
611.0
1890
Male, age 53, unknown
607.9
2097
Female, age 72, unknown
585.1
Median raphe nucleus nTPM: 566.9
2220
Male, age 76, midline
566.9
Periaquaductal grey, anterior nTPM: 728.5
2502
Female, age 75, unknown
812.3
1947
Male, age 18, unknown
694.5
1795
Male, age 51, unknown
678.7
Periaquaductal grey, dorsal nTPM: 544.6
1840
Male, age 53, unknown
617.5
2464
Female, age 72, unknown
574.4
1831
Male, age 72, unknown
535.1
2850
Male, age 76, both hemispheres
451.2
Periaquaductal grey, lateral nTPM: 543.5
2272
Male, age 74, both hemispheres
588.8
2053
Male, age 18, unknown
586.4
2140
Male, age 76, both hemispheres
455.3
Pretectal area nTPM: 602.6
1816
Male, age 51, unknown
683.2
2007
Male, age 72, unknown
669.6
1817
Female, age 42, unknown
667.3
1944
Female, age 72, unknown
623.8
1815
Male, age 53, unknown
608.7
2407
Male, age 75, both hemispheres
594.6
2825
Male, age 18, unknown
594.5
2667
Female, age 75, unknown
589.8
2224
Female, age 72, unknown
545.6
2273
Male, age 74, both hemispheres
536.7
2316
Male, age 76, right hemisphere
514.7
Red nucleus nTPM: 647.7
2584
Male, age 75, left hemisphere
753.6
2503
Female, age 72, unknown
719.0
2588
Male, age 74, left hemisphere
665.6
2769
Male, age 72, unknown
664.7
2227
Male, age 72, unknown
661.3
1821
Female, age 72, unknown
655.7
1865
Male, age 51, unknown
653.5
2785
Male, age 18, unknown
638.0
1904
Male, age 53, unknown
637.0
1954
Female, age 42, unknown
608.7
2725
Female, age 75, unknown
567.4
2823
Male, age 76, right hemisphere
548.1
Substantia nigra nTPM: 703.9
1916
Female, age 42, unknown
878.6
2665
Male, age 74, both hemispheres
785.4
1851
Male, age 51, unknown
773.7
2590
Female, age 75, unknown
696.6
2241
Male, age 72, unknown
691.7
1941
Male, age 53, unknown
685.3
2583
Male, age 75, right hemisphere
678.3
2699
Male, age 18, unknown
672.5
1889
Female, age 72, unknown
629.7
2409
Female, age 72, unknown
547.5
Superior colliculus nTPM: 649.5
2664
Male, age 75, both hemispheres
770.5
1796
Male, age 53, unknown
702.3
2261
Male, age 18, unknown
701.6
2668
Female, age 75, unknown
671.1
2087
Female, age 72, unknown
649.4
2587
Male, age 74, left hemisphere
645.4
1839
Male, age 51, unknown
619.0
1913
Female, age 42, unknown
601.2
1995
Male, age 72, unknown
585.7
1895
Male, age 76, right hemisphere
548.9
Ventral tegmental area nTPM: 663.0
2410
Female, age 72, unknown
713.3
1915
Female, age 42, unknown
689.4
2223
Female, age 72, unknown
662.8
2218
Male, age 76, both hemispheres
657.0
1942
Male, age 51, unknown
651.4
2021
Male, age 53, unknown
604.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
571.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 571.6
Samples: 183
Max nTPM: 1101.1
Min nTPM: 267.7
Std nTPM: 128.7
Median nTPM: 561.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1101.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1014.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
945.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
920.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
879.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
868.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
833.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
828.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
819.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
804.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
796.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
779.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
772.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
747.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
746.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
736.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
736.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
735.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
732.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
715.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
713.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
699.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
699.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
693.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
684.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
683.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
681.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
680.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
679.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
678.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
674.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
673.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
667.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
667.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
666.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
663.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
661.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
653.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
651.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
648.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
643.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
643.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
641.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
639.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
638.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
634.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
632.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
630.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
628.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
627.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
627.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
624.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
622.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
619.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
618.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
617.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
614.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
611.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
609.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
607.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
606.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
605.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
605.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
602.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
601.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
597.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
596.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
596.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
594.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
593.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
591.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
588.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
587.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
587.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
587.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
584.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
584.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
583.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
583.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
583.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
580.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
578.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
576.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
575.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
574.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
571.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
568.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
567.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
567.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
565.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
562.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
561.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
560.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
558.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
557.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
557.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
556.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
556.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
555.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
555.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
555.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
554.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
554.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
549.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
549.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
546.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
540.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
540.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
538.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
537.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
535.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
535.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
534.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
532.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
531.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
530.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
529.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
527.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
525.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
522.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
521.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
518.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
518.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
517.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
513.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
510.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
510.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
510.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
509.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
508.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
506.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
506.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
502.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
501.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
498.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
497.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
496.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
489.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
485.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
485.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
481.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
479.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
479.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
479.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
474.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
472.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
472.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
470.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
466.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
455.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
454.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
451.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
450.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
449.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
446.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
442.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
441.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
440.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
438.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
437.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
437.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
434.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
427.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
418.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
417.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
415.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
415.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
409.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
408.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
406.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
401.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
400.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
398.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
392.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
389.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
386.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
361.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
353.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
350.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
332.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
311.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
268.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
267.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
327.9
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 294.1
Samples: 1
Max nTPM: 294.1
Min nTPM: 294.1
Sample A
294.1
Midbrain nTPM: 232.3
Samples: 1
Max nTPM: 232.3
Min nTPM: 232.3
Sample A
232.3
Superior colliculi nTPM: 327.9
Samples: 1
Max nTPM: 327.9
Min nTPM: 327.9
Sample A
327.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
632.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 543.9
Samples: 3
Max nTPM: 606.8
Min nTPM: 490.7
Sample A
Female
606.8
Sample B
Female
490.7
Sample C
Male
534.3
Midbrain nTPM: 546.8
Samples: 3
Max nTPM: 625.5
Min nTPM: 493.2
Sample B
Female
493.2
Sample C
Male
625.5
Sample D
Male
521.7
Periaqueductal gray nTPM: 414.3
Samples: 3
Max nTPM: 447.2
Min nTPM: 348.9
Sample B
Female
446.9
Sample C
Male
447.2
Sample D
Male
348.9
Superior colliculi nTPM: 632.9
Samples: 4
Max nTPM: 665.7
Min nTPM: 590.6
Sample A
Female
665.7
Sample B
Female
662.3
Sample C
Male
613.0
Sample D
Male
590.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
873.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 873.6
Samples: 4
Max nTPM: 930.0
Min nTPM: 825.9
Sample A
883.5
Sample B
930.0
Sample C
854.9
Sample D
825.9
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
494.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 494.5
Samples: 4
Max nTPM: 518.0
Min nTPM: 466.6
Sample A
518.0
Sample A
493.7
Sample A
499.6
Sample A
466.6
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The Human Protein Atlas project is funded
