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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • PRDX2
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:400.0 nTPM
HPA Brain:360.1 nTPM
GTEx:400.0 nTPM
FANTOM5:173.0 Scaled Tags Per Million
Macaque:153.8 nTPM
Mouse:195.9 nTPM
Rat:287.8 nTPM
Pig:470.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 269.5
2019 Male, age 18, unknown 373.7
2219 Male, age 76, both hemispheres 348.7
2411 Female, age 72, unknown 313.2
1827 Male, age 72, unknown 301.4
2828 Female, age 72, unknown 267.2
1833 Male, age 53, unknown 234.6
2666 Male, age 74, left hemisphere 226.4
2586 Male, age 75, left hemisphere 217.7
1870 Female, age 42, unknown 216.2
1830 Male, age 51, unknown 196.4
Dorsal raphe nucleus
nTPM: 317.1
2298 Female, age 72, unknown 437.1
1828 Male, age 53, unknown 332.9
2047 Male, age 72, unknown 305.3
2750 Male, age 76, both hemispheres 276.9
2016 Female, age 72, unknown 233.4
Inferior colliculus
nTPM: 264.4
2097 Female, age 72, unknown 324.5
1890 Male, age 53, unknown 282.6
1848 Female, age 42, unknown 249.2
2849 Male, age 72, unknown 201.4
Median raphe nucleus
nTPM: 322.4
2220 Male, age 76, midline 322.4
Periaquaductal grey, anterior
nTPM: 278.0
1795 Male, age 51, unknown 305.4
1947 Male, age 18, unknown 274.3
2502 Female, age 75, unknown 254.4
Periaquaductal grey, dorsal
nTPM: 226.5
1831 Male, age 72, unknown 235.0
2464 Female, age 72, unknown 233.1
2850 Male, age 76, both hemispheres 222.3
1840 Male, age 53, unknown 215.6
Periaquaductal grey, lateral
nTPM: 228.8
2272 Male, age 74, both hemispheres 299.0
2140 Male, age 76, both hemispheres 194.0
2053 Male, age 18, unknown 193.3
Pretectal area
nTPM: 330.2
2007 Male, age 72, unknown 433.0
1817 Female, age 42, unknown 432.4
1944 Female, age 72, unknown 432.3
1816 Male, age 51, unknown 420.6
2667 Female, age 75, unknown 361.4
1815 Male, age 53, unknown 336.6
2224 Female, age 72, unknown 314.7
2273 Male, age 74, both hemispheres 301.5
2825 Male, age 18, unknown 205.9
2316 Male, age 76, right hemisphere 203.3
2407 Male, age 75, both hemispheres 190.5
Red nucleus
nTPM: 267.5
1821 Female, age 72, unknown 355.9
2785 Male, age 18, unknown 323.1
2725 Female, age 75, unknown 319.4
2503 Female, age 72, unknown 272.0
1954 Female, age 42, unknown 269.1
2823 Male, age 76, right hemisphere 258.8
2227 Male, age 72, unknown 255.0
2769 Male, age 72, unknown 255.0
1904 Male, age 53, unknown 253.9
1865 Male, age 51, unknown 248.2
2588 Male, age 74, left hemisphere 220.3
2584 Male, age 75, left hemisphere 179.1
Substantia nigra
nTPM: 360.1
1916 Female, age 42, unknown 555.1
1851 Male, age 51, unknown 433.5
1941 Male, age 53, unknown 412.8
1889 Female, age 72, unknown 408.4
2241 Male, age 72, unknown 375.5
2409 Female, age 72, unknown 326.9
2665 Male, age 74, both hemispheres 318.1
2699 Male, age 18, unknown 303.1
2590 Female, age 75, unknown 255.9
2583 Male, age 75, right hemisphere 211.9
Superior colliculus
nTPM: 257.7
2087 Female, age 72, unknown 376.7
2261 Male, age 18, unknown 299.3
1796 Male, age 53, unknown 297.1
2668 Female, age 75, unknown 270.0
1895 Male, age 76, right hemisphere 255.6
2587 Male, age 74, left hemisphere 252.9
1913 Female, age 42, unknown 223.7
1839 Male, age 51, unknown 216.5
1995 Male, age 72, unknown 201.8
2664 Male, age 75, both hemispheres 184.0
Ventral tegmental area
nTPM: 333.6
2410 Female, age 72, unknown 447.0
2218 Male, age 76, both hemispheres 423.9
1915 Female, age 42, unknown 386.7
1942 Male, age 51, unknown 291.9
2021 Male, age 53, unknown 227.0
2223 Female, age 72, unknown 225.2

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 400.0
Samples: 183

Max nTPM: 1081.6
Min nTPM: 128.4
Std nTPM: 163.2
Median nTPM: 382.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1081.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 984.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 816.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 809.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 803.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 802.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 800.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 781.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 757.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 747.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 726.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 691.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 660.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 657.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 615.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 612.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 606.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 590.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 586.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 584.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 584.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 583.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 582.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 574.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 572.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 566.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 565.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 564.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 554.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 551.4
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 540.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 540.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 535.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 534.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 531.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 526.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 526.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 523.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 522.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 520.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 513.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 508.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 504.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 488.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 483.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 475.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 474.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 465.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 463.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 456.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 454.2
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 446.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 444.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 443.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 440.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 439.0
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 434.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 434.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 427.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 426.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 425.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 423.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 423.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 423.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 419.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 418.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 416.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 416.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 414.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 413.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 411.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 406.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 403.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 403.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 402.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 400.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 400.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 397.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 396.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 396.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 396.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 395.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 395.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 394.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 393.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 392.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 391.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 387.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 386.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 385.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 383.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 382.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 382.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 377.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 377.4
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 372.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 371.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 368.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 368.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 365.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 363.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 363.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 355.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 354.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 351.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 351.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 349.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 343.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 339.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 338.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 338.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 337.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 335.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 333.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 331.1
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 330.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 329.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 328.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 328.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 328.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 328.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 326.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 325.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 325.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 324.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 319.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 318.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 316.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 315.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 311.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 311.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 307.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 307.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 301.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 286.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 285.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 284.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 281.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 279.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 276.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 274.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 274.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 272.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 271.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 270.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 269.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 265.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 264.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 260.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 254.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 251.9
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 246.3
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 245.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 243.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 239.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 238.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 234.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 232.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 230.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 228.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 224.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 223.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 218.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 218.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 214.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 211.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 210.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 208.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 208.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 208.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 207.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 206.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 201.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 188.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 178.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 176.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 176.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 169.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 163.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 141.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 138.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 134.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 128.4
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

173.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.0
FF:10158-103A5 76 years, female 173.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 1

Max nTPM: 89.0
Min nTPM: 89.0
Sample A 89.0
Midbrain
nTPM: 102.5
Samples: 1

Max nTPM: 102.5
Min nTPM: 102.5
Sample A 102.5
Superior colliculi
nTPM: 153.8
Samples: 1

Max nTPM: 153.8
Min nTPM: 153.8
Sample A 153.8

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

470.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 356.1
Samples: 3

Max nTPM: 465.2
Min nTPM: 251.2
Sample A Female 465.2
Sample B Female 251.2
Sample C Male 351.8
Midbrain
nTPM: 390.1
Samples: 3

Max nTPM: 529.3
Min nTPM: 302.3
Sample B Female 302.3
Sample C Male 529.3
Sample D Male 338.7
Periaqueductal gray
nTPM: 264.6
Samples: 3

Max nTPM: 311.3
Min nTPM: 223.8
Sample B Female 258.8
Sample C Male 311.3
Sample D Male 223.8
Superior colliculi
nTPM: 470.1
Samples: 4

Max nTPM: 649.0
Min nTPM: 364.4
Sample A Female 494.7
Sample B Female 372.2
Sample C Male 649.0
Sample D Male 364.4

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 195.9
Samples: 4

Max nTPM: 212.1
Min nTPM: 178.7
Sample A 212.1
Sample B 205.6
Sample C 178.7
Sample D 187.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.8
Rat sample Sample description nTPM
Midbrain
nTPM: 287.8
Samples: 4

Max nTPM: 303.5
Min nTPM: 269.8
Sample A 292.0
Sample A 286.0
Sample A 303.5
Sample A 269.8

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