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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:131.9 nTPM
HPA Brain:165.9 nTPM
GTEx:131.9 nTPM
FANTOM5:215.2 Scaled Tags Per Million
Pig:103.6 nTPM
Mouse:70.3 nTPM
Allen mouse:7.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.9
Sample id Sample description nTPM
Amygdala
nTPM: 131.4
1987 Female, age 91, left hemisphere 191.4
2814 Male, age 76, right hemisphere 162.4
2517 Female, age 94, left hemisphere 150.7
2514 Male, age 75, right hemisphere 93.4
2695 Female, age 67, right hemisphere 59.1
Basal amygdala
nTPM: 156.7
2685 Female, age 94, left hemisphere 201.3
2243 Female, age 91, right hemisphere 188.3
2110 Male, age 80, left hemisphere 179.4
2827 Female, age 67, right hemisphere 141.5
1955 Male, age 76, both hemispheres 134.3
2609 Male, age 75, right hemisphere 95.3
Central amygdala
nTPM: 165.9
2826 Female, age 94, left hemisphere 234.9
2701 Female, age 91, right hemisphere 170.0
1905 Male, age 76, both hemispheres 154.7
2239 Male, age 80, left hemisphere 152.7
2515 Male, age 75, right hemisphere 117.4
Corticomedial amygdala
nTPM: 165.7
2242 Female, age 91, right hemisphere 214.6
2829 Male, age 80, left hemisphere 201.2
2429 Female, age 94, left hemisphere 179.7
2535 Female, age 67, right hemisphere 175.9
2240 Male, age 76, both hemispheres 125.2
2428 Male, age 75, right hemisphere 97.4
Lateral amygdala
nTPM: 138.5
2534 Female, age 94, left hemisphere 250.1
1883 Male, age 76, both hemispheres 158.9
2255 Female, age 91, right hemisphere 149.7
2256 Male, age 80, left hemisphere 114.2
2516 Male, age 75, right hemisphere 84.2
2830 Female, age 67, right hemisphere 73.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 131.9
Samples: 152

Max nTPM: 386.4
Min nTPM: 17.2
Std nTPM: 53.7
Median nTPM: 125.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 386.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 268.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 267.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 262.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 248.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 241.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 240.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 231.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 229.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 222.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 220.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 219.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 217.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 206.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 202.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 198.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 197.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 194.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 186.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 184.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 183.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 180.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 176.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 171.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 168.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 165.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 163.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 163.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 161.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 160.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 159.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 155.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 153.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 152.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 151.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 149.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 146.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 145.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 144.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 143.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 142.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 142.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 141.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 141.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 140.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 140.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 140.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 139.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 138.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 135.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 131.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 129.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 128.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 128.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 128.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 126.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 126.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 125.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 124.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 124.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 120.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 117.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 117.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 116.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 115.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 114.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 110.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 108.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 106.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 105.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 105.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 101.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 101.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 101.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 100.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 100.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 100.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 99.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 97.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 96.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 96.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 94.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 92.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 88.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 85.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 82.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 82.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 74.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 70.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 68.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 66.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 66.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 57.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 52.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 52.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 51.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 36.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 33.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.2
FF:10151-102I7 76 years, female 215.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.6
Pig sample Sample description nTPM
Amygdala
nTPM: 103.6
Samples: 4

Max nTPM: 133.7
Min nTPM: 77.1
Sample A Female 133.7
Sample B Female 77.1
Sample C Male 96.2
Sample D Male 107.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 70.3
Samples: 4

Max nTPM: 73.4
Min nTPM: 67.6
Sample A Male 73.4
Sample B Male 67.6
Sample C Female 72.1
Sample D Female 68.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
68798085 Antisense, RP_050215_01_G03, Mouse strain C57BL/6J (56 days, male) 7.3

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